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Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales
Published on: August 21, 2019
Autocorrelation artifacts in optical coherence tomography and interferometric synthetic aperture microscopy
Brynmor J Davis1, Tyler S Ralston, Daniel L Marks
1Beckman Institute for Advanced Science and Technology, Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
Computational focusing in optical coherence tomography (OCT) images can computationally refocus out-of-focus planes. This technique also defocuses autocorrelation artifacts, a finding confirmed by experiments and simulations.
Area of Science:
- Biomedical Optics
- Microscopy
- Signal Processing
Background:
- Optical coherence tomography (OCT) is an imaging technique that provides cross-sectional views of biological tissues.
- Interferometric synthetic aperture microscopy (ISAM) processing allows for computational refocusing of OCT data.
- Traditionally, en face planes in OCT data that are out of focus are difficult to correct.
Purpose of the Study:
- To investigate the effect of ISAM processing on autocorrelation artifacts in OCT data.
- To demonstrate that computational focusing of en face planes in OCT data can also lead to defocusing of artifacts.
- To validate these findings through experimental and simulation methods.
Main Methods:
- Interferometric synthetic aperture microscopy (ISAM) processing applied to optical coherence tomography (OCT) data.
- Computational focusing of en face planes.
- Analysis of autocorrelation artifacts generated during Fourier-domain data collection.
- Experimental validation and numerical simulations.
Main Results:
- ISAM processing enables computational focusing of previously out-of-focus en face planes in OCT images.
- This image focusing process simultaneously induces a defocusing effect on autocorrelation artifacts.
- The observed defocusing of artifacts was confirmed through both experimental measurements and computational simulations.
Conclusions:
- Computational focusing using ISAM in OCT is effective for improving image quality by correcting out-of-focus planes.
- A key consequence of this focusing is the mitigation of autocorrelation artifacts.
- The findings highlight a dual effect of ISAM processing, offering benefits for both image clarity and artifact reduction in OCT.
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