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POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid

Kana Shimizu1, Shuichi Hirose, Tamotsu Noguchi

  • 1Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan. poodle@cbrc.jp

Bioinformatics (Oxford, England)
|June 30, 2007
PubMed
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Protein-protein Interfaces02:04

Protein-protein Interfaces

Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...