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Updated: Jul 13, 2026

Synthesizing Amino Acids Modified with Reactive Carbonyls in Silico to Assess Structural Effects Using Molecular Dynamics Simulations
Published on: April 26, 2024
Gas-phase ionic syntheses of amino acids: beta versus alpha
Jamie L Snow1, Galina Orlova, Voislav Blagojevic
1Department of Chemistry, St. Francis Xavier University, Antigonish, Nova Scotia, Canada.
This study reveals that gas-phase reactions preferentially form beta-alanine (beta-AlaH+) over alpha-alanine (alpha-AlaH+) due to lower energy barriers and stable hydrogen bonding. These findings suggest interstellar chemistry may produce amino acids found in meteorites.
Area of Science:
- Astrochemistry
- Computational Chemistry
- Physical Chemistry
Background:
- Amino acids like glycine (Gly) and alanine (Ala) are fundamental biomolecules.
- Understanding their formation pathways, especially in extraterrestrial environments, is crucial.
Purpose of the Study:
- To investigate the gas-phase reaction mechanisms for synthesizing protonated glycine (GlyH+) and alanine (AlaH+) from protonated hydroxylamine and small carboxylic acids.
- To determine the factors governing the stereochemical outcome (alpha- vs. beta-isomer) of alanine formation.
Main Methods:
- Theoretical calculations (density functional theory) to determine reaction pathways, transition states, and energy profiles.
- Experimental validation using selected ion flow tube mass spectrometry (SIFT-MS) and multi-collision-induced dissociation (MCID).
Main Results:
- The reaction proceeds via amino group insertion into a C-H bond.
- Formation of beta-alanine (beta-AlaH+) is kinetically and thermodynamically favored over alpha-alanine (alpha-AlaH+).
- Lower activation energy and more stable hydrogen bonding in transition states and products explain the preference for the beta-isomer.
Conclusions:
- Gas-phase synthesis of amino acids shows a strong preference for the beta-isomer of alanine.
- Interstellar chemical processes may be responsible for the presence of glycine and beta-alanine in carbonaceous chondrite meteorites.
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