Related Experiment Video
Updated: Jul 13, 2026

10:44
In Vitro Selection of Engineered Transcriptional Repressors for Targeted Epigenetic Silencing
Published on: May 5, 2023
Bin1 interacts with and restrains the DNA end-binding protein complex Ku
Arivudainambi Ramalingam1, George E Farmer, Thomas D Stamato
1Lankenau Institute for Medical Research, Wynnewood, Pennsylvania 19096, USA.
Cell Cycle (Georgetown, Tex.)
|August 3, 2007
Summary
The Bin1 protein interacts with Ku, a DNA repair complex, suggesting a new role for Bin1 in cancer suppression. This interaction impacts DNA repair and telomere length, offering novel therapeutic targets.
Area of Science:
- Molecular Biology
- Cell Biology
- Cancer Research
Background:
- The Bin1 gene encodes a BAR adapter protein involved in cancer suppression through poorly understood mechanisms.
- Identifying Bin1-interacting proteins can elucidate its biological functions.
Purpose of the Study:
- To identify cellular proteins that form biochemical complexes with Bin1.
- To investigate the functional relevance of the Bin1-Ku interaction in DNA repair and cancer suppression.
Main Methods:
- Affinity purification using the Bin1 BAR domain to isolate interacting proteins from human and murine cell extracts.
- Biochemical assays to confirm Bin1-Ku binding.
- Functional studies in fission yeast (hob1+, pku70+, pku80+) to assess the impact of the interaction on DNA damage survival and telomere length.
Main Results:
- Bin1 physically binds to Ku70 and Ku80, key components of the DNA end-binding protein complex.
- A mutation in the Bin1 BAR domain that abolishes its anti-cancer activity also abolishes Ku binding.
- Deletion of Ku homologs in fission yeast rescues the DNA damage sensitivity of Bin1 homolog mutants.
- The Bin1-Ku interaction influences telomere length.
Conclusions:
- Bin1 interacts with the Ku complex, suggesting a novel mechanism for its tumor-suppressive function.
- The Bin1-Ku interaction is functionally relevant to DNA repair and telomere maintenance.
- Targeting the Bin1-Ku interaction may offer new avenues for cancer therapy.
Related Concept Videos
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
Restarting Stalled Replication Forks
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...
Negative Regulator Molecules
Positive regulators allow a cell to advance through cell cycle checkpoints. Negative regulators have an equally important role as they terminate a cell’s progression through the cell cycle—or pause it—until the cell meets specific criteria.
Eukaryotic Transcription Inhibitors
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a DNA...
Eukaryotic transcription inhibitors usually contain two distinct domains, a DNA...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
Fixing Double-strand Breaks
The double-stranded structure of DNA has two major advantages. First, it serves as a safe repository of genetic information where one strand serves as the back-up in case the other strand is damaged. Second, the double-helical structure can be wrapped around proteins called histones to form nucleosomes, which can then be tightly wound to form chromosomes. This way, DNA chains up to 2 inches long can be contained within microscopic structures in a cell. A double-stranded break not only damages...

