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Updated: Jul 13, 2026

Preparation and Cryo-FIB micromachining of Saccharomyces cerevisiae for Cryo-Electron Tomography
Published on: November 20, 2021
A protocol for isolation and visualization of yeast nuclei by scanning electron microscopy (SEM)
Elena Kiseleva1, Terry D Allen, Sandra A Rutherford
1Institute of Cytology and Genetics, Russian Academy of Science, Novosibirsk, Russia. elka@bionet.nsu.ru
This protocol details yeast nuclear isolation and immuno-gold labeling for high-resolution imaging using field emission scanning electron microscopy (FESEM). It enables visualization of the nuclear envelope (NE) and nuclear pore complexes (NPCs).
Area of Science:
- Cell Biology
- Microscopy Techniques
Background:
- Studying yeast nuclear structure requires robust isolation and high-resolution imaging methods.
- Existing techniques may not adequately preserve delicate nuclear components for detailed visualization.
Purpose of the Study:
- To establish a detailed protocol for isolating yeast nuclei.
- To enable immuno-gold labeling and visualization of nuclear structures using FESEM.
- To optimize sample preparation for long-term storage and image acquisition.
Main Methods:
- Isolation of nuclei from Saccharomyces cerevisiae and Schizosaccharomyces pombe.
- Two nuclear isolation methods: enzymatic spheroplast formation or whole-cell freezing and mechanical disruption.
- Immuno-gold labeling of target proteins within isolated nuclei.
- Visualization using field emission scanning electron microscopy (FESEM).
Main Results:
- Successful isolation of yeast nuclei from both budding and fission yeast strains.
- High-resolution imaging of the yeast nuclear envelope (NE), nuclear pore complexes (NPCs), and associated cytoskeletal elements.
- Demonstration of sample stability under vacuum for extended periods, facilitating image acquisition.
Conclusions:
- The developed protocol provides a reliable method for yeast nuclear isolation and high-resolution imaging.
- This technique is valuable for studying the structural organization of the yeast nucleus, including the NE and NPCs.
- The protocol's sample preservation capabilities enhance the efficiency of FESEM-based investigations.
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Scanning Electron Microscopy
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Preparation of Samples for Electron Microscopy
Overview of Electron Microscopy
Immunogold Electron Microscopy

