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Updated: Jul 12, 2026

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Knowledge-based methods to help clinicians find answers in MEDLINE.
Charles A Sneiderman1, Dina Demner-Fushman, Marcelo Fiszman
1National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA. charlie@nlm.nih.gov
Combining traditional search with knowledge-based systems significantly improves access to medical research for clinical decision-making. This hybrid approach enhances the retrieval of practical clinical advice from large databases like MEDLINE.
Area of Science:
- Medical Informatics
- Information Retrieval
- Clinical Decision Support
Background:
- Large medical research databases are crucial for evidence-based clinical decision-making.
- Traditional information retrieval systems can be time-consuming, limiting practical clinical application.
- Augmenting retrieval with knowledge-based methods may improve access to clinical advice.
Purpose of the Study:
- To evaluate a hybrid approach combining traditional information retrieval with knowledge-based methods.
- To determine if this approach facilitates finding practical clinical advice in medical literature.
- To assess the effectiveness of experimental systems (SemRep, Essie, CQA-1.0) in retrieving relevant MEDLINE citations for clinical questions.
Main Methods:
- Three experimental systems (SemRep, Essie, CQA-1.0) were evaluated using 15 therapy and prevention questions of varying complexity.
- Systems were tested individually and in combination (fusion).
- Retrieval performance was measured using mean average precision and binary preference, focusing on the top relevant citations presented.
Main Results:
- Fusion of the three systems significantly outperformed individual systems (p < 0.01), with mean average precision of 0.57 and binary preference of 0.71.
- All systems consistently presented three to four relevant citations within the first five retrieved results.
- Knowledge-based processing demonstrated improvements in retrieving relevant MEDLINE citations.
Conclusions:
- A hybrid approach augmenting traditional retrieval with knowledge-based methods shows promise for clinical practice.
- This method can assist physicians in efficiently answering clinical questions using medical research literature.
- Improved retrieval of relevant evidence supports evidence-based medical decision-making.
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