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Updated: Jul 12, 2026

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Published on: November 14, 2025
Microfluidic system for on-chip high-throughput whole-animal sorting and screening at subcellular resolution
Christopher B Rohde1, Fei Zeng, Ricardo Gonzalez-Rubio
1Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.
Summary
We developed microfluidic devices for high-throughput whole-animal genetic and drug screening. These tools enable subcellular resolution analysis of Caenorhabditis elegans in vivo, advancing complex biological research.
Area of Science:
- Biotechnology
- Genetics
- Pharmacology
Background:
- High-throughput screening (HTS) is crucial for genetic and drug discovery.
- Analyzing whole animals at subcellular resolution presents significant technical challenges.
Purpose of the Study:
- To develop and present a suite of microfluidic devices for complex, high-throughput whole-animal genetic and drug screens.
- To enable subcellular resolution phenotypic analysis in physiologically active animals without anesthesia.
Main Methods:
- High-speed microfluidic sorter for isolating and immobilizing Caenorhabditis elegans.
- Integrated chip with individually addressable screening chambers for compound exposure and time-lapse imaging.
- Novel designs for compound library delivery and animal dispensing.
Main Results:
- Demonstrated a microfluidic sorter capable of isolating and immobilizing C. elegans for subcellular phenotypic screening.
- Developed an integrated chip for anesthesia-free, high-resolution imaging and compound exposure of multiple animals.
- Showcased compatibility with standard multiwell plates for compound delivery and animal collection.
Conclusions:
- The developed microfluidic devices facilitate high-throughput assays, including genetic, RNAi, and drug screens at subcellular resolution.
- These tools support advanced in vivo manipulations like femtosecond laser microsurgery for neural studies.
- The system enhances the efficiency and precision of whole-animal screening and manipulation studies.

