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Updated: Jul 12, 2026

A Method to Study de novo Formation of Chromatin Domains
Published on: August 23, 2019
Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes
Maxim Nekrasov1, Tetyana Klymenko, Sven Fraterman
1Gene Expression Programme, EMBL, Heidelberg, Germany.
Abstract:
PRC2 is thought to be the histone methyltransferase (HMTase) responsible for H3-K27 trimethylation at Polycomb target genes. Here we report the biochemical purification and characterization of a distinct form of Drosophila PRC2 that contains the Polycomb group protein polycomblike (Pcl). Like PRC2, Pcl-PRC2 is an H3-K27-specific HMTase that mono-, di- and trimethylates H3-K27 in nucleosomes in vitro. Analysis of Drosophila mutants that lack Pcl unexpectedly reveals that Pcl-PRC2 is required to generate high levels of H3-K27 trimethylation at Polycomb target genes but is dispensable for the genome-wide H3-K27 mono- and dimethylation that is generated by PRC2. In Pcl mutants, Polycomb target genes become derepressed even though H3-K27 trimethylation at these genes is only reduced and not abolished, and even though targeting of the Polycomb protein complexes PhoRC and PRC1 to Polycomb response elements is not affected. Pcl-PRC2 is thus the HMTase that generates the high levels of H3-K27 trimethylation in Polycomb target genes that are needed to maintain a Polycomb-repressed chromatin state.
Insights
Polycomb Repressive Complex 2 (PRC2) with polycomblike (Pcl) generates high H3-K27 trimethylation for Polycomb target gene repression. This Pcl-PRC2 complex is crucial for maintaining gene silencing, unlike general PRC2 activity.
Area of Science:
- Epigenetics
- Chromatin Biology
- Developmental Biology
Background:
- Polycomb Repressive Complex 2 (PRC2) is a key epigenetic regulator.
- PRC2 is implicated in H3-K27 trimethylation, a mark associated with gene silencing.
- The precise role of PRC2 variants in regulating Polycomb target genes requires further elucidation.
Purpose of the Study:
- To biochemically characterize a distinct Drosophila PRC2 complex containing polycomblike (Pcl).
- To determine the specific HMTase activity of Pcl-PRC2 in vitro and in vivo.
- To investigate the role of Pcl-PRC2 in regulating Polycomb target gene expression and H3-K27 methylation states.
Main Methods:
- Biochemical purification of Drosophila PRC2 complexes.
- In vitro HMTase assays using nucleosomes.
- Analysis of Drosophila mutants lacking Pcl.
- Assessment of gene expression and histone methylation states in mutant and wild-type flies.
Main Results:
- A distinct Pcl-PRC2 complex was purified, exhibiting H3-K27 mono-, di-, and trimethylation activity.
- Pcl-PRC2 is essential for high levels of H3-K27 trimethylation at Polycomb target genes.
- Pcl-PRC2 is dispensable for genome-wide H3-K27 mono- and dimethylation.
- Loss of Pcl leads to derepression of Polycomb target genes despite reduced, not abolished, H3-K27 trimethylation.
Conclusions:
- Pcl-PRC2 is the specific HMTase responsible for high H3-K27 trimethylation at Polycomb target genes.
- This high trimethylation level is critical for maintaining Polycomb-mediated gene repression.
- Pcl-PRC2 activity is distinct from the general PRC2 complex's role in lower-level H3-K27 methylation.
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