A novel HLA-C allele, Cw*0119, isolated from the Han Chinese

L Ding1, W Z Lin, Y P Wu

  • 1Department of Biochemistry, College of Life Sciences, Sun Yat-Sen (Zhongshan) University, Guangzhou 510275, China.

Tissue Antigens
|September 5, 2007
PubMed

Insights

A new Human Leukocyte Antigen-C (HLA-C) allele, named Cw*0119, was discovered in a Han Chinese individual. This novel allele presents distinct genetic variations at codons 76 and 178 compared to the known Cw*010201 allele.

Area of Science:

  • Immunogenetics
  • Molecular Anthropology

Background:

  • Human Leukocyte Antigen (HLA) genes are crucial for immune response.
  • HLA-C alleles exhibit significant diversity across global populations.
  • Understanding HLA polymorphism is vital for transplantation and disease association studies.

Purpose of the Study:

  • To report the identification and characterization of a novel HLA-C allele.
  • To describe the specific genetic differences of this new allele.

Main Methods:

  • DNA sequencing of the HLA-C gene.
  • Bioinformatic analysis to compare the novel sequence with existing HLA databases.

Main Results:

  • A novel HLA-C allele, designated Cw*0119, was identified in an individual of Han Chinese ancestry.
  • Cw*0119 differs from the reference allele Cw*010201 by two nucleotide substitutions: AGC to TGC at codon 76 and CTG to CCG at codon 178.

Conclusions:

  • The discovery of Cw*0119 expands the known repertoire of HLA-C alleles.
  • This finding contributes to the detailed cataloging of HLA genetic diversity within the Han Chinese population.

Related Concept Videos

Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Hepatitis01:25

Hepatitis

Hepatitis is an inflammatory condition of the liver most commonly caused by hepatotropic viruses (A–E), though non-infectious causes such as alcohol and drugs also exist.Hepatitis AHepatitis A virus (HAV) is a non-enveloped RNA virus of the Picornaviridae family. It is primarily transmitted via the fecal-oral route, typically through ingestion of contaminated food or water. After ingestion, HAV enters the bloodstream through the oropharynx or intestinal epithelium and reaches the liver. The...
Exon Recombination02:32

Exon Recombination

The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon has three reading...