A note on controlling the number of false positives
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Edward L Korn1, Boris Freidlin
1Biometric Research Branch, National Cancer Institute, Bethesda, MD 20852-7434, USA. korne@ctep.nci.nih.gov
Abstract:
Lehmann and Romano (2005, Annals of Statistics33, 1138-1154) discuss a Bonferroni-type procedure that bounds the probability that the number of false positives is larger than a specified number. We note that this procedure will have poor power as compared to a multivariate permutation test type procedure when the experimental design accommodates a permutation test. An example is given involving gene expression microarray data of breast cancer tumors.
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