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Updated: Jul 11, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
Regulation of Ci-SCFSlimb binding, Ci proteolysis, and hedgehog pathway activity by Ci phosphorylation
Margery G Smelkinson1, Qianhe Zhou, Daniel Kalderon
1Department of Biological Sciences, Columbia University, New York, NY 10027, USA.
Insights
Hedgehog (Hh) signaling regulates Ci/Gli transcription factors through phosphorylation. This study reveals how CK1 and GSK3 phosphorylation sites on Ci create a graded proteolytic response to Hh, influencing developmental processes.
Area of Science:
- Cellular signaling
- Developmental biology
- Molecular mechanisms
Background:
- Hedgehog (Hh) proteins are crucial signaling molecules in development.
- Hh signaling regulates Ci/Gli transcription factors via proteolytic processing and activity modulation.
- In the absence of Hh, Ci/Gli undergoes phosphorylation, leading to SCF ubiquitin ligase complex binding and proteolysis.
Purpose of the Study:
- To elucidate the molecular mechanisms by which CK1 and GSK3 sites on Ci influence its interaction with SCF ubiquitin ligase complexes.
- To understand how these phosphorylation events contribute to a graded proteolytic response to Hh signaling.
- To investigate the role of Su(fu) in limiting Ci activity when proteolysis is impaired.
Main Methods:
- Biochemical assays to study the interaction between phosphorylated Ci and SCF complexes.
- Site-directed mutagenesis of CK1 and GSK3 phosphorylation sites on Ci.
- Analysis of Ci variants to assess proteolytic processing and transcriptional activity.
- Investigating the regulatory role of Su(fu) on Ci activity.
Main Results:
- Multiple successively phosphorylated CK1 sites on Ci form an extended binding site for SCF(Slimb).
- GSK3 enhances Ci binding to SCF complexes, potentially through interactions with other SCF components.
- Altered CK1 and GSK3 sites demonstrate that numerous phosphorylation sites confer a sensitive and graded proteolytic response to Hh.
- Su(fu) was identified as the principal regulator of Ci specific activity when proteolysis is compromised.
Conclusions:
- The extensive phosphorylation of Ci by CK1 and GSK3 is critical for mediating a graded proteolytic response to Hh signaling.
- This graded response, coupled with changes in Ci activity, orchestrates morphogenetic outcomes.
- Su(fu) plays a key role in regulating Ci activity, particularly under conditions of compromised proteolysis.
Abstract:
Hedgehog (Hh) proteins signal by inhibiting the proteolytic processing of Ci/Gli family transcription factors and by increasing Ci/Gli-specific activity. When Hh is absent, phosphorylation of Ci/Gli triggers binding to SCF ubiquitin ligase complexes and consequent proteolysis. Here we show that multiple successively phosphorylated CK1 sites on Ci create an atypical extended binding site for the SCF substrate recognition component Slimb. GSK3 enhances binding primarily through a nearby region of Ci, which might contact an SCF component other than Slimb. Studies of Ci variants with altered CK1 and GSK3 sites suggest that the large number of phosphorylation sites that direct SCF(Slimb) binding confers a sensitive and graded proteolytic response to Hh, which collaborates with changes in Ci-specific activity to elicit a morphogenetic response. We also show that when Ci proteolysis is compromised, its specific activity is limited principally by Su(fu), and not by Cos2 cytoplasmic tethering or PKA phosphorylation.
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