Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

ButterflyBase: a platform for lepidopteran genomics.

Alexie Papanicolaou1, Steffi Gebauer-Jung, Mark L Blaxter

  • 1Institute for Evolutionary Biology, University of Edinburgh, King's Buildings, EH9 3JT, UK.

Nucleic Acids Research
|October 16, 2007
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The genome sequence of the Purple Treble-bar, <i>Aplocera praeformata</i> (Hübner, 1826) (Lepidoptera: Geometridae).

Wellcome open research·2026
Same author

The genome sequence of the Spotted Sulphur, <i>Emmelia trabealis</i> (Scopoli, 1763) (Lepidoptera: Noctuidae).

Wellcome open research·2026
Same author

The genome sequence of the Clouded Buff, <i>Diacrisia sannio</i> (Linnaeus, 1758) (Lepidoptera: Erebidae).

Wellcome open research·2026
Same author

The genome sequence of <i>Heligmosomum mixtum</i> Schulz, 1929 (Rhabditida: Heligmosomidae).

Wellcome open research·2026
Same author

Overexpression of Hiilp2 enhances the biosynthesis of unsaturated fatty acid in Hermetia illucens.

Insect biochemistry and molecular biology·2026
Same author

The genome sequence of the Southern White Admiral, <i>Limenitis reducta</i> (Staudinger, 1901) (Lepidoptera: Nymphalidae).

Wellcome open research·2026
Same journal

Correction to 'scSuperAnnotator: A platform for benchmarking comparison and visualizing automated cellular annotation methods for scRNA-seq data'.

Nucleic acids research·2026
Same journal

Correction to 'Differentiable partition function calculation for RNA'.

Nucleic acids research·2026
Same journal

Deployment of non-canonical splicing in tunicate genomes is mediated by divergent U2AF function and changing m6A modification in U1 and U6 snRNA.

Nucleic acids research·2026
Same journal

Bacillus subtilis DnaB forms multiple protein-protein interactions essential for DNA replication initiation.

Nucleic acids research·2026
Same journal

Multiple forms of protein-protein and DNA binding are exhibited by BrxC from the BREX phage restriction system.

Nucleic acids research·2026
Same journal

Biosynthesis of glycosylated 5-hydroxycytosine in the DNA of diverse viruses.

Nucleic acids research·2026
See all related articles

ButterflyBase is a new online portal for lepidopteran genomics, offering a unified resource for over 273,000 expressed sequence tags (ESTs) from 30 species. This database aids researchers in evolutionary biology and genomics by providing access to clustered gene sets and annotations.

Area of Science:

  • Genomics
  • Bioinformatics
  • Evolutionary Biology

Background:

  • Lepidoptera represent a significant insect group with diverse research communities.
  • Existing genomic resources for Lepidoptera are fragmented, lacking a centralized access point.
  • The growing volume of genomic data necessitates a unified resource for analysis.

Purpose of the Study:

  • To introduce ButterflyBase, a novel, unified online portal for lepidopteran genomics.
  • To provide researchers with a comprehensive platform for accessing and analyzing lepidopteran genomic data.
  • To support various research needs, including molecular marker development and phylogenetic analysis.

Main Methods:

  • Clustering of over 273,000 expressed sequence tags (ESTs) from more than 30 Lepidoptera species.

Related Experiment Videos

  • Generation of unigene sets and protein translations.
  • Annotation of clusters and translations using BLAST similarity, Gene Ontology (GO), Enzyme Classification (EC), and Kyoto Encyclopaedia of Genes and Genomes (KEGG) terms.
  • Implementation of similarity search tools like BLAST and MS-BLAST.

    • Main Results:

    • Creation of stable unigene sets and robust protein translations for lepidopteran species.
    • Comprehensive annotation of genomic data, facilitating functional and evolutionary studies.
    • Development of a searchable database supporting diverse research applications.

    Conclusions:

    • ButterflyBase serves as a crucial, unified resource for the lepidopteran research community.
    • The platform enhances capabilities for molecular marker development, orthologue prediction, and evolutionary process studies.
    • Future expansion will incorporate additional genomic, ecological, and mapping data.