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Updated: Jul 10, 2026

Cerebellar Regional Dissection for Molecular Analysis
Published on: December 5, 2020
Spinocerebellar ataxia with axonal neuropathy: consequence of a Tdp1 recessive neomorphic mutation?
Ryuki Hirano1, Heidrun Interthal, Cheng Huang
1Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Abstract:
Tyrosyl-DNA phosphodiesterase 1 (Tdp1) cleaves the phosphodiester bond between a covalently stalled topoisomerase I (Topo I) and the 3' end of DNA. Stalling of Topo I at DNA strand breaks is induced by endogenous DNA damage and the Topo I-specific anticancer drug camptothecin (CPT). The H493R mutation of Tdp1 causes the neurodegenerative disorder spinocerebellar ataxia with axonal neuropathy (SCAN1). Contrary to the hypothesis that SCAN1 arises from catalytically inactive Tdp1, Tdp1-/- mice are indistinguishable from wild-type mice, physically, histologically, behaviorally, and electrophysiologically. However, compared to wild-type mice, Tdp1-/- mice are hypersensitive to CPT and bleomycin but not to etoposide. Consistent with earlier in vitro studies, we show that the H493R Tdp1 mutant protein retains residual activity and becomes covalently trapped on the DNA after CPT treatment of SCAN1 cells. This result provides a direct demonstration that Tdp1 repairs Topo I covalent lesions in vivo and suggests that SCAN1 arises from the recessive neomorphic mutation H493R. This is a novel mechanism for disease since neomorphic mutations are generally dominant.
Insights
Tyrosyl-DNA phosphodiesterase 1 (Tdp1) repairs DNA damage caused by topoisomerase I (Topo I) stalling. The SCAN1 mutation in Tdp1 causes disease not by inactivity, but by a novel dominant-acting neomorphic mechanism.
Area of Science:
- DNA repair mechanisms
- Neurodegenerative disease genetics
Background:
- Tyrosyl-DNA phosphodiesterase 1 (Tdp1) resolves topoisomerase I (Topo I) covalent complexes stalled at DNA strand breaks.
- Stalled Topo I-DNA complexes are induced by DNA damaging agents like camptothecin (CPT) and endogenous DNA damage.
- The H493R mutation in Tdp1 is linked to spinocerebellar ataxia with axonal neuropathy (SCAN1).
Purpose of the Study:
- To investigate the in vivo function of Tdp1 and the pathogenic mechanism of the H493R mutation in SCAN1.
- To determine if Tdp1 deficiency causes a SCAN1-like phenotype in mice.
- To elucidate the role of Tdp1 activity in response to CPT and other DNA damaging agents.
Main Methods:
- Generation and characterization of Tdp1 knockout (Tdp1-/-) mice.
- Phenotypic analysis of Tdp1-/- mice (physical, histological, behavioral, electrophysiological).
- Assessment of CPT, bleomycin, and etoposide sensitivity in Tdp1-/- mice.
- Analysis of H493R Tdp1 mutant protein activity and DNA trapping in SCAN1 patient cells.
Main Results:
- Tdp1-/- mice exhibit normal physical, histological, behavioral, and electrophysiological characteristics compared to wild-type mice.
- Tdp1-/- mice show hypersensitivity to CPT and bleomycin, but not etoposide.
- The H493R Tdp1 mutant protein retains residual catalytic activity and becomes covalently trapped on DNA after CPT treatment in SCAN1 cells.
Conclusions:
- Tdp1 deficiency alone does not recapitulate the SCAN1 phenotype, suggesting a more complex mechanism.
- Tdp1 plays a crucial role in repairing Topo I-DNA covalent lesions in vivo.
- The SCAN1 disease likely arises from a recessive neomorphic mutation (H493R) in Tdp1, a novel disease mechanism.
- Neomorphic mutations, typically dominant, may act recessively in the context of Tdp1 and SCAN1.
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