Related Experiment Video
Updated: Jul 10, 2026

06:48
CD Spectroscopy to Study DNA-Protein Interactions
Published on: February 10, 2022
gamma-Zein secondary structure in solution by circular dichroism
Tatiana C Bicudo1, Rogério C Bicudo, Lucimara A Forato
1Universidade de São Paulo, Instituto de Química de São Carlos, Av. Trabalhador Sãocarlense, 400, São Carlos, SP 13560-970, Brazil.
Biopolymers
|November 13, 2007
Summary
Gamma-zein
Area of Science:
- Plant protein structure
- Biophysical characterization
- Maize storage proteins
Background:
- The N-terminal domain of gamma-zein, rich in proline, plays a role in cell membrane crossing.
- A synthetic hexapeptide (PPPVHL) from gamma-zein's N-terminus can adopt a polyproline II (PPII) conformation in solution.
- Previous studies using solid-state spectroscopies could not quantify PPII content in gamma-zein due to signal overlap.
Purpose of the Study:
- To analyze the secondary structure of gamma-zein, focusing on PPII conformation.
- To overcome limitations of solid-state techniques for PPII measurement in physiological environments.
- To determine PPII content in gamma-zein under various solution conditions.
Main Methods:
- Circular dichroism spectroscopy was employed to analyze gamma-zein's secondary structure.
- Experiments were conducted in SDS aqueous solution (with and without DTT) and in 60% 2-propanol/water with DTT.
- Spectroscopic data were analyzed to differentiate and quantify secondary structure elements.
Main Results:
- Gamma-zein exhibited high helical content across all tested solutions.
- The polyproline II (PPII) conformation was detected at approximately 7% specifically in the water/DTT solution.
- SDS and 2-propanol solutions did not significantly promote the PPII conformation.
Conclusions:
- Gamma-zein maintains a predominantly helical structure in various aqueous and solvent conditions.
- The PPII conformation in gamma-zein is context-dependent and can be observed under specific reducing conditions.
- Circular dichroism provides a viable method for assessing PPII content in gamma-zein, overcoming previous limitations.
Related Concept Videos
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR
The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
At room temperature, the chair conformer of cyclohexane undergoes rapid ring flipping between two equivalent chair conformers at a rate of approximately 105 times per second. These two chair conformers are in equilibrium. The rapid ring flipping results in the interconversion of the axial proton to an equatorial proton and an equatorial to the axial proton. Such interconversions are too rapid and cannot be detected on the NMR timescale. Hence, the NMR spectrometer cannot distinguish between the...
Protein Folding
Overview

