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Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
Published on: September 5, 2019
Stochastic actions for diffusive dynamics: reweighting, sampling, and minimization
1Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0520, USA. adiba@mail.nih.gov
The Journal of Physical Chemistry. B
|November 15, 2007
Summary
Two distinct action functionals in diffusive dynamics are equivalent for trajectory sampling. However, the most probable path calculation requires the action involving the second derivative due to Brownian motion
Area of Science:
- Physics
- Computational Physics
- Statistical Mechanics
Background:
- Diffusive dynamics simulations often employ two distinct action functionals to define trajectory probability distributions.
- One common action functional requires calculating the potential's second derivative alongside the force.
Purpose of the Study:
- To reconcile the apparent paradox between two action functionals used in diffusive dynamics.
- To clarify the conditions under which these functionals are equivalent for trajectory sampling and reweighting.
- To determine the correct action functional for identifying the most probable path.
Main Methods:
- Theoretical analysis of action functionals in the context of diffusive dynamics.
- Consideration of the mathematical properties of Brownian paths, specifically their nondifferentiable nature.
- Incorporation of trajectory-associated "entropy" into the analysis.
Main Results:
- Both action functionals are demonstrated to be equivalent for trajectory reweighting and sampling.
- The action functional incorporating the second derivative term is identified as the correct one for determining the most probable path.
- The nondifferentiable nature of Brownian paths and trajectory entropy explain the observed equivalence and differences.
Conclusions:
- The choice of action functional in diffusive dynamics is critical for accurate most probable path determination.
- Understanding Brownian path properties and trajectory entropy resolves ambiguities in action functional application.
- This work clarifies fundamental aspects of simulating and analyzing diffusive processes.
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