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DNA Agarose Gel Electrophoresis02:35

DNA Agarose Gel Electrophoresis

Agarose gel electrophoresis is a laboratory technique commonly used to separate DNA fragments by size. However, it can also be used to isolate and purify DNA fragments using a gel extraction protocol.
Gel extraction follows five major steps: running gel electrophoresis to separate fragments, isolating the individual bands, extracting DNA from those bands, and removing the dye and salts from the extracted mixture to obtain pure DNA.
In cloning experiments, both the insert and vector DNA...
SDS-PAGE01:27

SDS-PAGE

Gel electrophoresis is a method that separates biological macromolecules like nucleic acids or proteins by forcing them to pass through a gel matrix under an electric field.
A variation of gel electrophoresis, termed  polyacrylamide gel electrophoresis (PAGE), is commonly used for separating proteins according to their molecular size by passing them through a polyacrylamide gel. Because of the varying charges associated with amino acid side chains, PAGE can be used to separate intact proteins...
Southern Blot02:57

Southern Blot

Agarose gel electrophoresis is very useful in separating DNA fragments by size. Running a DNA ladder containing fragments of the known length alongside the sample helps determine the approximate length of the sample DNA fragments. However, additional steps are needed to verify the sequence identity of the sample DNA fragments.
Denatured DNA fragments must be transferred onto a carrier membrane from the gel to make it accessible to a probe - a small ssDNA fragment complementary to the target DNA...

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Related Experiment Video

Updated: Jul 10, 2026

Fluorescent Silver Staining of Proteins in Polyacrylamide Gels
06:24

Fluorescent Silver Staining of Proteins in Polyacrylamide Gels

Published on: April 21, 2019

Silver staining DNA in polyacrylamide gels.

Brant J Bassam1, Peter M Gresshoff

  • 1Corbett Life Science, Brisbane Technology Park, 42 McKechnie Drive, Eight Mile Plains, Queensland 4113, Australia.

Nature Protocols
|November 17, 2007
PubMed
Summary

This protocol details a fast, 1-hour silver staining method for visualizing DNA fragments after polyacrylamide gel electrophoresis (PAGE). It offers high sensitivity, detecting picogram levels of DNA with improved contrast and fewer artifacts.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Biotechnology

Background:

  • Polyacrylamide gel electrophoresis (PAGE) is a standard technique for separating biomolecules.
  • Visualizing low-abundance DNA fragments and organic molecules can be challenging with traditional methods.
  • Existing staining protocols may lack sensitivity or introduce artifacts.

Purpose of the Study:

  • To describe a simple, rapid, and highly sensitive silver staining protocol for PAGE.
  • To enhance the visualization of DNA fragments and other organic molecules.
  • To provide an updated method with improved image contrast and reduced risk of staining artifacts.

Main Methods:

  • Utilizes a silver staining technique following polyacrylamide gel electrophoresis (PAGE).

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A Fast Silver Staining Protocol Enabling Simple and Efficient Detection of SSR Markers using a Non-denaturing Polyacrylamide Gel

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DNA Staining Method Based on Formazan Precipitation Induced by Blue Light Exposure
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Published on: January 28, 2018

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Last Updated: Jul 10, 2026

Fluorescent Silver Staining of Proteins in Polyacrylamide Gels
06:24

Fluorescent Silver Staining of Proteins in Polyacrylamide Gels

Published on: April 21, 2019

A Fast Silver Staining Protocol Enabling Simple and Efficient Detection of SSR Markers using a Non-denaturing Polyacrylamide Gel
10:27

A Fast Silver Staining Protocol Enabling Simple and Efficient Detection of SSR Markers using a Non-denaturing Polyacrylamide Gel

Published on: April 20, 2018

DNA Staining Method Based on Formazan Precipitation Induced by Blue Light Exposure
08:11

DNA Staining Method Based on Formazan Precipitation Induced by Blue Light Exposure

Published on: January 28, 2018

  • Employs readily available chemicals and materials for accessibility.
  • Follows an updated protocol based on Bassam et al. (1991) for improved performance.
  • Main Results:

    • Achieves sensitivity comparable to radioisotopic methods.
    • Reliably detects DNA fragments in the picogram range.
    • Provides unsurpassed detail and improved image contrast.

    Conclusions:

    • The described silver staining protocol is a fast (approx. 1 hour) and effective method for visualizing biomolecules on PAGE gels.
    • The protocol offers high sensitivity and clarity, suitable for detecting low concentrations of DNA.
    • Emphasis on quality reagents and clean handling is crucial for optimal results and minimizing artifacts.