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Epigenetic regulation of RhoB loss of expression in lung cancer
Julien Mazières1, Daniel Tovar, Biao He
1INSERM U563 - Département Innovation Thérapeutique et Oncologie Moléculaire, F-31052, Toulouse, France. mazieres.j@chu-toulouse.fr
Background:
RhoB is down-regulated in most lung cancer cell lines and tumor tissues when compared with their normal counterparts. The mechanism of this loss of expression is not yet deciphered.
Methods:
Since no mutation has been reported in the RhoB sequence, we investigated the epigenetic regulation of RhoB expression by analyzing the effect of HDAC inhibitors and methyltransferase inhibitors, by direct sequencing after bisulfite treatment and by methylation specific PCR.
Results:
We first showed that histone deacetylase (HDAC) inhibitors induce a significant RhoB re-expression in lung cancer cell lines whereas only a slight effect was observed with methyl transferase inhibitors. As promoter methylation is the most common epigenetic process in lung cancer, we performed methylation specific PCR and sequence analysis after bisulfite treatment and demonstrated that RhoB was methylated neither in lung cancer cell lines nor in tumor tissues. We also showed that a variable number of tandem repeats sequences in the 5' region of the RhoB gene was involved in HDAC response.
Conclusion:
We thus propose that RhoB regulation of expression occurs mainly by histone deacetylation rather than by promoter hypermethylation and that this process can be modulated by specific 5' sequences within the promoter.
Insights
The study reveals that histone deacetylation, not promoter methylation, primarily controls RhoB expression in lung cancer. This epigenetic regulation can be influenced by specific 5' sequences in the RhoB gene.
Area of Science:
- Molecular Biology
- Epigenetics
- Cancer Research
Background:
- RhoB expression is significantly reduced in lung cancer cell lines and tissues compared to normal counterparts.
- The underlying mechanisms for RhoB down-regulation in lung cancer remain largely unknown.
- No mutations have been identified in the RhoB gene sequence, suggesting epigenetic factors are involved.
Purpose of the Study:
- To investigate the epigenetic mechanisms responsible for RhoB down-regulation in lung cancer.
- To determine the role of histone deacetylation and DNA methylation in regulating RhoB expression.
- To explore potential therapeutic strategies targeting RhoB expression in lung cancer.
Main Methods:
- Analysis of RhoB expression following treatment with histone deacetylase (HDAC) inhibitors and methyltransferase inhibitors.
- Direct sequencing of the RhoB gene after bisulfite treatment to assess DNA methylation status.
- Methylation-specific PCR to detect promoter methylation in lung cancer cell lines and tissues.
- Investigation of the role of 5' variable number tandem repeat (VNTR) sequences in RhoB regulation.
Main Results:
- HDAC inhibitors significantly re-expressed RhoB in lung cancer cell lines, while methyltransferase inhibitors showed only a minor effect.
- RhoB promoter methylation was not detected in lung cancer cell lines or tumor tissues.
- Specific 5' VNTR sequences within the RhoB gene were found to influence the response to HDAC inhibitors.
- These findings suggest histone deacetylation is the predominant epigenetic mechanism regulating RhoB.
Conclusions:
- RhoB expression in lung cancer is primarily regulated by histone deacetylation, not promoter hypermethylation.
- The epigenetic regulation of RhoB can be modulated by specific 5' sequences within its promoter region.
- Targeting histone deacetylation may represent a viable therapeutic strategy for restoring RhoB expression in lung cancer.
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