Related Experiment Video
Updated: Jul 8, 2026

10:28
A Semi-High-Throughput Adaptation of the NADH-Coupled ATPase Assay for Screening Small Molecule Inhibitors
Published on: August 17, 2019
ATP binding by monarch-1/NLRP12 is critical for its inhibitory function
Zhengmao Ye1, John D Lich, Chris B Moore
1Department of Microbiology and Immunology, University of North Carolina, CB7295, 450 West St., Chapel Hill, NC 27599, USA.
Molecular and Cellular Biology
|December 28, 2007
Summary
Purified Monarch-1/NLRP12 protein binds and hydrolyzes ATP, a function requiring intact Walker A/B motifs. This ATP binding regulates Monarch-1
Area of Science:
- Molecular Biology
- Immunology
- Biochemistry
Background:
- Nucleotide-binding domain-leucine-rich repeat (NLR) proteins are crucial in innate immunity and linked to human disorders.
- The nucleotide-binding domain (NBD) is a defining feature of NLRs but remains understudied in its purified form.
- Monarch-1/NLRP12 is an NLR protein that negatively regulates NF-kappaB signaling.
Purpose of the Study:
- To investigate the biochemical properties of purified Monarch-1/NLRP12, focusing on its nucleotide-binding domain.
- To elucidate the role of ATP binding and hydrolysis in Monarch-1/NLRP12 function and regulation of NF-kappaB signaling.
Main Methods:
- Purification of Monarch-1/NLRP12 protein.
- In vitro assays to assess ATP binding and hydrolysis activity.
- Site-directed mutagenesis to create Walker A/B motif mutants.
- Cell-based assays using THP-1 monocytes to evaluate Monarch-1/NLRP12 function in NF-kappaB signaling and cytokine production.
Main Results:
- Purified Monarch-1/NLRP12 specifically binds ATP and exhibits ATP hydrolysis activity.
- Intact Walker A/B motifs are essential for Monarch-1/NLRP12's ATP hydrolysis, self-oligomerization, and interaction with signaling molecules (NIK, IRAK-1).
- A Walker A/B mutant Monarch-1 protein leads to increased pro-inflammatory cytokine and chemokine production, mimicking Monarch-1 silencing.
Conclusions:
- ATP binding and hydrolysis by the Walker A/B motifs are critical for Monarch-1/NLRP12's anti-inflammatory function.
- These findings support a model where ATP binding regulates Monarch-1/NLRP12's inhibitory activity on NF-kappaB signaling.
Related Concept Videos
ATP Synthase: Mechanism
In animals, the mitochondrial F1F0 ATP synthase is the key protein that synthesizes ATP molecules through a complex catalytic mechanism. While the nuclear genome encodes the majority of ATP synthase subunits, the mitochondrial genome encodes some of the enzyme's most critical components. The formation of this multi-subunit enzyme is a complex multi-step process regulated at the level of transcription, translation, and assembly. Defects in one or more of these steps can result in decreased ATP...
Allosteric Proteins-ATCase
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis pathway,...
The Electron Transport Chain
The electron transport chain or oxidative phosphorylation is an exothermic process in which free energy released during electron transfer reactions is coupled to ATP synthesis. This process is a significant source of energy in aerobic cells, and therefore inhibitors of the electron transport chain can be detrimental to the cell's metabolic processes.
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q in...
Inhibitors of the electron transport chain
Rotenone, a widely used pesticide, prevents electron transfer from Fe-S cluster to ubiquinone or Q in...
Regulation of the Unfolded Protein Response
Inositol-requiring kinase one or IRE1 is the most conserved eukaryotic unfolded protein response (UPR) receptor. It is a type I transmembrane protein kinase receptor with a distinctive site-specific RNase activity. As the binding mechanics of the misfolded proteins with the N-terminal domain of IRE-1 are unclear, three binding models — direct, indirect, and allosteric -- are proposed for receptor activation. Nevertheless, it is known that once a misfolded protein associates with IRE1, it...
ATP Synthase: Structure
ATP synthase or ATPase is among the most conserved proteins found in bacteria, mammals, and plants. This enzyme can catalyze a forward reaction in response to the electrochemical gradient, producing ATP from ADP and inorganic phosphate. ATP synthase can also work in a reverse direction by hydrolyzing ATP and generating an electrochemical gradient. Different forms of ATP synthases have evolved special features to meet the specific demands of the cell. Based on their specific feature, ATP...
Regulation of Nuclear Protein Sorting
Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...

