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TBase - an Integrated Electronic Health Record and Research Database for Kidney Transplant Recipients
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The TAIR database.

Rebecca L Poole1

  • 1Biological Sciences Building, Clifton, Bristol, UK.

Methods in Molecular Biology (Clifton, N.J.)
|February 22, 2008
PubMed
Summary
This summary is machine-generated.

The Arabidopsis Information Resource (TAIR) provides researchers with a user-friendly, web-based platform for accessing and analyzing extensive Arabidopsis thaliana data. It offers tools for searching, visualizing gene data, and exploring biochemical pathways.

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Area of Science:

  • Plant Biology
  • Bioinformatics
  • Genomics

Background:

  • The model plant Arabidopsis thaliana is crucial for plant research.
  • Access to comprehensive and integrated data is essential for researchers.

Purpose of the Study:

  • To describe The Arabidopsis Information Resource (TAIR) as a central hub for Arabidopsis thaliana data.
  • To highlight key tools within TAIR for data retrieval, visualization, and analysis.

Main Methods:

  • Utilizing a relational database to store diverse data types (gene, mapping, protein, expression, community).
  • Implementing user-friendly web-based tools for data access and analysis.
  • Describing specific tools: Simple Search, Seq Viewer, and AraCyc with examples.

Main Results:

  • TAIR offers a sophisticated, extensive, and user-friendly web resource.
  • Data can be effectively searched, downloaded, and analyzed using provided tools.
  • Seq Viewer enables visualization of chromosomes and annotations; AraCyc visualizes biochemical pathways with data overlays.

Conclusions:

  • TAIR serves as an indispensable resource for the Arabidopsis research community.
  • The integrated data and analytical tools facilitate deeper understanding of Arabidopsis thaliana.
  • TAIR enhances research efficiency through accessible and comprehensive data management.