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BarleyBase/PLEXdb.

Roger P Wise1, Rico A Caldo, Lu Hong

  • 1Corn Insects and Crop Genetics Research, USDA-ARS and Department of Plant Pathology and Center for Plant Responses to Environmental Stresses, Iowa State University, Ames, IA, USA.

Methods in Molecular Biology (Clifton, N.J.)
|February 22, 2008
PubMed
Summary
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BarleyBase and PLEXdb offer integrated plant gene expression data for functional genomics. These public resources enable hypothesis-driven research by linking expression data with genomics and phenotypic information.

Area of Science:

  • Plant genomics
  • Bioinformatics
  • Functional genomics

Background:

  • BarleyBase and PLEXdb are public databases for plant gene expression analysis.
  • They integrate high-throughput microarray data with structural genomics and phenotypic information.

Purpose of the Study:

  • To provide a unified platform for analyzing plant gene expression data.
  • To support functional interpretation of microarray experiments.
  • To facilitate hypothesis building by interlinking diverse biological data.

Main Methods:

  • Development of a unified web interface for data access and analysis.
  • Integration of gene expression data with genomic, transcriptomic, and phenotypic data.
  • Linking array data to analytical tools such as Gene Ontology, BLAST, and expression analysis.

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Main Results:

  • A comprehensive resource for exploring gene expression patterns across various plant species and experimental conditions.
  • Enables users to perform complex queries by integrating data from multiple sources.
  • Facilitates comparative analysis of gene expression experiments.

Conclusions:

  • BarleyBase/PLEXdb empowers researchers to conduct in-depth functional genomics studies.
  • The integrated approach enhances the interpretation of gene expression data.
  • These resources are valuable for the plant science community for data analysis and discovery.