Related Experiment Video
Updated: Jul 6, 2026

11:36
A Protocol for Functional Assessment of Whole-Protein Saturation Mutagenesis Libraries Utilizing High-Throughput Sequencing
Published on: July 3, 2016
Single-step overlap-primer-walk polymerase chain reaction for multiple mutagenesis without overlap extension
1Institute of Microbial Technology, Chandigarh 160036, India.
Analytical Biochemistry
|March 29, 2008
Summary
We developed overlap-primer-walk PCR, a fast, single-tube method for efficiently introducing multiple DNA mutations. This technique simplifies genetic engineering by using overlapping primers for targeted mutagenesis in cloned DNA, including the human TNF-alpha gene.
Area of Science:
- Molecular Biology
- Genetic Engineering
- Biotechnology
Background:
- Polymerase chain reaction (PCR) is widely used for DNA mutagenesis.
- Existing PCR-based methods can be complex or inefficient for multiple mutations.
Purpose of the Study:
- To present a simple, rapid, single-tube method for introducing multiple mutations into cloned DNA.
- To offer an efficient alternative to existing mutagenesis techniques.
Main Methods:
- Developed overlap-primer-walk PCR, a novel mutagenesis technique.
- Utilizes two common oligodeoxyribonucleotides and a series of overlapping primers.
- Requires only one additional primer for two to three mutations.
Main Results:
- Demonstrated a simple, single-step, and rapid method for introducing multiple mutations.
- Successfully introduced several mutations into the human TNF-alpha encoding gene.
- The method proves effective for introducing mutations at various sites within target DNA.
Conclusions:
- Overlap-primer-walk PCR is a highly efficient method for introducing multiple, site-specific mutations.
- This technique simplifies and accelerates the process of DNA mutagenesis.
- The method has broad applicability in genetic engineering and molecular biology research.
Related Concept Videos
PCR
Overview
In vitro Mutagenesis
To learn more about the function of a gene, researchers can observe what happens when the gene is inactivated or “knocked out,” by creating genetically engineered knockout animals. Knockout mice have been particularly useful as models for human diseases such as cancer, Parkinson’s disease, and diabetes.
Translesion DNA Polymerases
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Mismatch Repair
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Proofreading
Synthesis of new DNA molecules is carried out by the enzyme DNA polymerase, which adds nucleotides on the daughter strand complementary to the template DNA strand. DNA polymerase has a higher affinity to add the correct base and ensures fidelity during DNA replication. Furthermore, it exhibits proofreading activity during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.
Errors During Replication are Corrected by the DNA Polymerase Enzyme
Errors During Replication are Corrected by the DNA Polymerase Enzyme

