Related Experiment Video
Updated: Jul 5, 2026

Transmembrane Domain Oligomerization Propensity determined by ToxR Assay
Published on: May 26, 2011
Crystal twinning of human MD-2 recognizing endotoxin cores of lipopolysaccharide
Umeharu Ohto1, Yoshinori Satow
1Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo 113-0033, Japan.
Abstract:
Twinning of crystals causes overlapping of two or more reciprocal lattice points, and hence structure amplitudes for a single crystalline domain are hardly obtained from X-ray diffraction intensities. MD-2 protein forms a stable complex with Toll-like receptor 4 and recognizes bacterial lipopolysaccharide (LPS). Excessive immune responses activated by LPS cause septic shocks. Saccharide-trimmed human MD-2 crystallizes in the tetragonal form with apparent Laue symmetry of 4/mmm, and diffraction intensities from these crystals indicate crystal twinning. The crystal consists of two different domains, A and B. The c(A) axis of domain A coincides with the c(B) axis of domain B with a smaller lattice, and the a(A) axis corresponds to the (a(B) + b(B)) axis. This twinning severely imposes difficulty in structure determination. Through optimization of cryoprotectant, domain A was thoroughly transformed into domain B. The crystal containing only domain B is in space group P4(1)2(1)2 with one MD-2 molecule in the asymmetric unit. The structure of this form of MD-2 as well as its complex with antiendotoxic lipid IVa was successfully determined using the multiple isomorphous replacement method.
Insights
Crystal twinning in MD-2 protein, a key player in septic shock response, hindered structure determination. Optimization enabled single-domain crystallization, revealing the MD-2 structure and its complex with lipid IVa.
Area of Science:
- Biochemistry
- Structural Biology
- Crystallography
Background:
- MD-2 protein forms a complex with Toll-like receptor 4, recognizing bacterial lipopolysaccharide (LPS).
- LPS-induced immune responses can lead to septic shock.
- Crystal twinning complicates X-ray diffraction analysis for structure determination.
Purpose of the Study:
- To overcome crystal twinning challenges in saccharide-trimmed human MD-2.
- To determine the crystal structure of MD-2.
- To elucidate the structure of the MD-2 complex with antiendotoxic lipid IVa.
Main Methods:
- Crystallization of saccharide-trimmed human MD-2 in a tetragonal form.
- Optimization of cryoprotectant to transform twinned domains into a single domain.
- Structure determination using the multiple isomorphous replacement method.
Main Results:
- Crystal twinning was identified in the tetragonal form of MD-2.
- A cryoprotectant optimization strategy successfully yielded single-domain crystals.
- The crystal structure of MD-2 in space group P4(1)2(1)2 was determined.
- The structure of the MD-2-lipid IVa complex was also successfully elucidated.
Conclusions:
- Overcoming crystal twinning is crucial for determining the structure of MD-2.
- The determined structures provide insights into MD-2's role in LPS recognition and immune response.
- This work facilitates further research into potential anti-endotoxic therapies.
More Related Videos
09:30Analyzing Dynamic Protein Complexes Assembled On and Released From Biolayer Interferometry Biosensor Using Mass Spectrometry and Electron Microscopy
Published on: August 6, 2018
10:59Enrichment of Bacterial Lipoproteins and Preparation of N-terminal Lipopeptides for Structural Determination by Mass Spectrometry
Published on: May 21, 2018
Related Concept Videos
Formation of Lipopolysaccharides
Bacterial Toxins
Peptidoglycan Synthesis