Crystal twinning of human MD-2 recognizing endotoxin cores of lipopolysaccharide

Umeharu Ohto1, Yoshinori Satow

  • 1Graduate School of Pharmaceutical Sciences, University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo 113-0033, Japan.

Insights

Crystal twinning in MD-2 protein, a key player in septic shock response, hindered structure determination. Optimization enabled single-domain crystallization, revealing the MD-2 structure and its complex with lipid IVa.

Area of Science:

  • Biochemistry
  • Structural Biology
  • Crystallography

Background:

  • MD-2 protein forms a complex with Toll-like receptor 4, recognizing bacterial lipopolysaccharide (LPS).
  • LPS-induced immune responses can lead to septic shock.
  • Crystal twinning complicates X-ray diffraction analysis for structure determination.

Purpose of the Study:

  • To overcome crystal twinning challenges in saccharide-trimmed human MD-2.
  • To determine the crystal structure of MD-2.
  • To elucidate the structure of the MD-2 complex with antiendotoxic lipid IVa.

Main Methods:

  • Crystallization of saccharide-trimmed human MD-2 in a tetragonal form.
  • Optimization of cryoprotectant to transform twinned domains into a single domain.
  • Structure determination using the multiple isomorphous replacement method.

Main Results:

  • Crystal twinning was identified in the tetragonal form of MD-2.
  • A cryoprotectant optimization strategy successfully yielded single-domain crystals.
  • The crystal structure of MD-2 in space group P4(1)2(1)2 was determined.
  • The structure of the MD-2-lipid IVa complex was also successfully elucidated.

Conclusions:

  • Overcoming crystal twinning is crucial for determining the structure of MD-2.
  • The determined structures provide insights into MD-2's role in LPS recognition and immune response.
  • This work facilitates further research into potential anti-endotoxic therapies.

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