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Combining Multiplex Fluorescence In Situ Hybridization with Fluorescent Immunohistochemistry on Fresh Frozen or Fixed Mouse Brain Sections
Published on: June 25, 2021
Hybridization histochemistry of neural transcripts.
1National Institutes of Health, Bethesda, Maryland, USA.
Current Protocols in Neuroscience
|April 23, 2008
Summary
This study details hybridization histochemistry techniques for locating and quantifying RNA transcripts within cells. These methods, using various probes and detection methods, enable precise gene expression analysis in different tissues and states.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Gene expression is fundamental to cellular function, producing RNA transcripts.
- Hybridization histochemistry (in situ hybridization) allows for the precise localization of RNA transcripts within cells.
- Quantification of RNA transcripts is crucial for understanding gene expression dynamics in various biological contexts.
Purpose of the Study:
- To describe detailed hybridization histochemical techniques for RNA transcript localization and quantification.
- To present methods for using both oligonucleotide and RNA (riboprobes) probes.
- To introduce techniques for detecting RNA transcripts using digoxigenin-labeled probes and autoradiography.
Main Methods:
- Utilizing oligonucleotide and RNA probes for hybridization histochemistry.
- Employing digoxigenin labeling for colorimetric detection of RNA transcripts.
- Implementing autoradiographic detection for radiolabeled probes.
- Describing Northern blot analyses for RNA probe assessment.
Main Results:
- Successful localization of RNA transcripts at cellular resolution.
- Quantification of relative transcript amounts in different tissues and states.
- Demonstration of Y chromosome detection using specific riboprobes.
- Established protocols for probe labeling and hybridization.
Conclusions:
- Hybridization histochemistry provides powerful tools for studying gene expression at the cellular level.
- The described techniques offer versatility in probe selection and detection methods.
- These methods facilitate the analysis of gene expression patterns in diverse biological samples.

