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Using the KEGG database resource.

Kiyoko F Aoki¹, Minoru Kanehisa

¹Bioinformatics Center, Kyoto University, Japan.

Current Protocols in Bioinformatics

|April 23, 2008

Summary

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The Kyoto Encyclopedia of Genes and Genomes (KEGG) offers integrated genomic, chemical, and network data. This resource provides protocols for analyzing cellular functions and biological pathways using bioinformatics tools.

Area of Science:

Bioinformatics
Systems Biology
Genomics

Background:

The Kyoto Encyclopedia of Genes and Genomes (KEGG) is a comprehensive bioinformatics database.
It integrates genomic, chemical, and network information for understanding cellular functions.
KEGG provides a framework for exploring biological systems from high-level to genomic perspectives.

Purpose of the Study:

To describe protocols for utilizing the KEGG database and its associated modules.
To enable users to leverage KEGG's extensive functionalities for biological research.
To guide users in analyzing complex biological data, including pathways, genes, and molecular interactions.

Main Methods:

Utilizing KEGG PATHWAY for pathway analysis.
Employing KEGG GENES for gene information retrieval.

Related Experiment Videos

Applying KEGG SSDB, KEGG EXPRESSION, and KEGG LIGAND for specific data analyses.

Implementing protocols for map coloring, compound comparison, and microarray data visualization.

Main Results:

Detailed protocols are provided for various KEGG functionalities.
Users can effectively analyze and visualize genomic and molecular data.
The resource facilitates the understanding of cellular functions and biological networks.

Conclusions:

KEGG serves as a powerful, integrated bioinformatics resource.
The described protocols enhance the utility of KEGG for diverse biological research.
Comprehensive analysis of cellular functions and biological pathways is achievable through KEGG.