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Updated: Jul 5, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
SPARC promoter hypermethylation in colorectal cancers can be reversed by 5-Aza-2'deoxycytidine to increase SPARC
S Cheetham1, M J Tang, F Mesak
1Division of Gastroenterology, University of British Columbia and Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.
Abstract:
Poor clinical outcomes in cancer can often be attributed to inadequate response to chemotherapy. Strategies to overcome either primary or acquired chemoresistance may ultimately impact on patients' survival favourably. We previously showed that lower levels of SPARC were associated with therapy-refractory colorectal cancers (CRC), and that upregulating its expression enhances chemo-sensitivity resulting in greater tumour regression in vivo. Here, we examined aberrant hypermethylation of the SPARC promoter as a potential mechanism for repressing SPARC in CRCs and whether restoration of its expression with a demethylating agent 5-Aza-2'deoxycytidine (5-Aza) could enhance chemosensitivity. Initially, the methylation status of the SPARC promoter from primary human CRCs were assessed following isolation of genomic DNA from laser capture microdissected specimens by direct DNA sequencing. MIP101, RKO, HCT 116, and HT-29 CRC cell lines were also used to evaluate the effect of 5-Aza on: SPARC promoter methylation, SPARC expression, the interaction between DNMT1 and the SPARC promoter (ChIP assay), cell viability, apoptosis, and cell proliferation. Our results revealed global hypermethylation of the SPARC promoter in CRCs, and identified specific CpG sites that were consistently methylated in CRCs but not in normal colon. We also demonstrate that SPARC repression in CRC cell lines could be reversed following exposure to 5-Aza, which resulted in increased SPARC expression, leading to a significant reduction in cell viability (by an additional 39% in RKO cells) and greater apoptosis (an additional 18% in RKO cells), when combined with 5-FU in vitro (in comparison to 5-FU alone). Our exciting findings suggest potential diagnostic markers of CRCs based on specific methylated CpG sites. Moreover, the results reveal the therapeutic utility of employing demethylating agents to improve response through augmentation of SPARC expression.
Insights
Aberrant hypermethylation of the SPARC promoter causes chemoresistance in colorectal cancer (CRC). Demethylating agents like 5-Aza-2'deoxycytidine (5-Aza) can restore SPARC expression, enhancing chemotherapy response and patient survival.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Chemoresistance significantly impacts cancer patient outcomes.
- Reduced SPARC expression is linked to therapy-refractory colorectal cancers (CRCs).
- SPARC upregulation enhances chemo-sensitivity and tumor regression.
Purpose of the Study:
- Investigate SPARC promoter hypermethylation as a mechanism for SPARC repression in CRCs.
- Evaluate the efficacy of 5-Aza-2'deoxycytidine (5-Aza) in restoring SPARC expression and chemosensitivity.
Main Methods:
- Assessed SPARC promoter methylation in human CRCs and cell lines using DNA sequencing.
- Treated CRC cell lines with 5-Aza to analyze its effects on methylation, SPARC expression, DNMT1 interaction, cell viability, apoptosis, and proliferation.
- Utilized ChIP assays to study DNMT1 and SPARC promoter interactions.
Main Results:
- Identified global hypermethylation of the SPARC promoter in CRCs, with specific methylated CpG sites absent in normal colon tissue.
- Demonstrated that 5-Aza treatment reversed SPARC repression, increasing SPARC expression in CRC cell lines.
- Showed that combining 5-Aza with 5-fluorouracil (5-FU) significantly reduced cell viability and increased apoptosis in vitro compared to 5-FU alone.
Conclusions:
- Aberrant SPARC promoter hypermethylation contributes to chemoresistance in colorectal cancer.
- Specific methylated CpG sites in the SPARC promoter may serve as diagnostic markers for CRCs.
- Demethylating agents like 5-Aza hold therapeutic potential for overcoming chemoresistance by augmenting SPARC expression.
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