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Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
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CLePAPS: fast pair alignment of protein structures based on conformational letters

Sheng Wang1, Wei-Mou Zheng

  • 1Institute of Theoretical Physics, Academia Sinica, Beijing 100080, China.

Journal of Bioinformatics and Computational Biology
|May 9, 2008
PubMed
Summary

This study introduces CLePAPS, a novel tool for fast protein structure alignment. It uses conformational letters and string comparison, avoiding dynamic programming for efficient analysis of growing protein structure data.

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