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Updated: Jul 5, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage
Eric Batchelor1, Caroline S Mock, Irun Bhan
1Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.
Abstract:
DNA damage initiates a series of p53 pulses. Although much is known about the interactions surrounding p53, little is known about which interactions contribute to p53's dynamical behavior. The simplest explanation is that these pulses are oscillations intrinsic to the p53/Mdm2 negative feedback loop. Here we present evidence that this simple mechanism is insufficient to explain p53 pulses; we show that p53 pulses are externally driven by pulses in the upstream signaling kinases, ATM and Chk2, and that the negative feedback between p53 and ATM, via Wip1, is essential for maintaining the uniform shape of p53 pulses. We propose that p53 pulses result from repeated initiation by ATM, which is reactivated by persistent DNA damage. Our study emphasizes the importance of collecting quantitative dynamic information at high temporal resolution for understanding the regulation of signaling pathways and opens new ways to manipulate p53 pulses to ask questions about their function in response to DNA damage.
Insights
DNA damage triggers p53 pulses. These pulses are driven by upstream kinases ATM and Chk2, not just the p53/Mdm2 loop, revealing new insights into DNA damage signaling.
Area of Science:
- Molecular Biology
- Cell Signaling
- DNA Damage Response
Background:
- The tumor suppressor protein p53 exhibits pulsatile behavior following DNA damage.
- The p53/Mdm2 negative feedback loop is widely considered the primary driver of p53 dynamics.
- The specific mechanisms governing the precise shape and timing of p53 pulses remain incompletely understood.
Purpose of the Study:
- To investigate the underlying mechanisms responsible for the pulsatile dynamics of p53.
- To determine whether the p53/Mdm2 loop alone can explain observed p53 pulses.
- To elucidate the roles of upstream signaling kinases and feedback loops in regulating p53 dynamics.
Main Methods:
- Quantitative analysis of p53 dynamics at high temporal resolution.
- Investigation of the influence of upstream kinases ATM (Ataxia-Telangiectasia Mutated) and Chk2 (Checkpoint Kinase 2) on p53 pulsing.
- Examination of the role of the Wip1 (Wild-type p53-induced phosphatase 1) feedback loop in modulating p53 pulse characteristics.
Main Results:
- Evidence suggests the p53/Mdm2 negative feedback loop is insufficient to explain p53 pulses.
- p53 pulses are externally driven by upstream signaling kinases ATM and Chk2.
- Negative feedback involving p53, ATM, and Wip1 is crucial for maintaining uniform p53 pulse shapes.
Conclusions:
- p53 pulses are initiated by repeated ATM activation, driven by persistent DNA damage.
- The Wip1-mediated feedback loop is essential for stabilizing p53 pulse uniformity.
- High-resolution dynamic data are critical for understanding complex signaling pathway regulation and offer avenues for therapeutic manipulation.
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