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Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
Interstitial deletion of 1p22.2p31.1 and medium-chain acyl-CoA dehydrogenase deficiency in a patient with global
Gustavo H B Maegawa1, Nicola K Poplawski, Brage Storstein Andresen
1Research Institute, Hospital for Sick Children, Toronto, Ontario, Canada. gustavo.maegawa@sickkids.ca
Insights
This study details a rare case of medium chain acyl-CoA dehydrogenase deficiency in a child, caused by a combination of a genetic mutation and a chromosomal deletion on chromosome 1.
Area of Science:
- Genetics
- Biochemistry
- Pediatrics
Background:
- Medium chain acyl-CoA dehydrogenase deficiency (MCADD) is an inherited metabolic disorder affecting fatty acid oxidation.
- Early diagnosis and intervention are crucial for managing MCADD symptoms like seizures and developmental delays.
Observation:
- A 6-year-old girl presented with seizures, developmental delay, and facial dysmorphism.
- Biochemical analysis indicated MCADD, with a novel ACADM gene mutation identified.
- Further investigation revealed a 15.5 Mb interstitial deletion on chromosome 1, encompassing the ACADM locus.
Findings:
- The patient exhibited a unique combination of an ACADM gene mutation and a chromosomal deletion (1p22.2p31.1).
- This dual genetic anomaly contributed to the patient's fatty acid oxidation defect and clinical presentation.
- Analysis of similar deletion cases suggests a variable phenotype associated with 1p22 and 1p31/32 deletions.
Implications:
- This case highlights the importance of comprehensive genomic investigation when initial genetic findings are inconsistent with the clinical picture.
- It underscores the potential for complex genetic interactions, including chromosomal abnormalities, to cause metabolic disorders.
- The findings expand our understanding of the genetic basis of fatty acid oxidation defects and their phenotypic variability.
Abstract:
We report on a 6-year-old girl who presented at 6 months of age with seizures, delayed psychomotor development and mild facial dysmorphism. A small muscular ventricular septal defect was documented on echocardiogram and brain MRI showed a frontal brain anomaly. Urine organic acid analysis revealed dicarboxylic aciduria, and plasma acylcarnitine analysis showed marked elevation of octanoyl (C8) and decanoyl (C10) carnitines with C8:C10 ratio of 9:1. These results were indicative of medium chain acyl-CoA dehydrogenase deficiency. ACADM gene sequencing showed an apparent homozygous c.166G > C (Ala31Pro) missense mutation in exon 3; however, only the mother was found to be a carrier of this novel missense mutation. This finding along with non-regressive developmental delay prompted further karyotype and genomic investigations. An interstitial deletion of chromosome 1 was detected by repeat G-banding: 46,XX,del(1)(p22.2p31.1). Parental karyotypes were normal. The deletion was characterized by array CGH analysis using a 1 Mb BAC/PAC array platform. Clones deleted extended from RP11-88B10 (1p31.1) to RP5-1007M22 (1p22.2), a 15.5 Mb deletion which includes the ACADM locus. Clinical review of 6/7 cases of interstitial deletions with breakpoints of 1p22 and 1p31/32, including the patient in this report, indicate a variable phenotype. Thus, although G-band breakpoints are similar, common breakpoints for these alterations are unlikely. This is the first report of a patient with fatty acid oxidation defect caused by a mutation in combination with an interstitial chromosomal deletion.
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