Related Experiment Video
Updated: Jul 4, 2026

Single-Molecule Measurement of Protein Interaction Dynamics Within Biomolecular Condensates
Published on: January 5, 2024
Hydration-dependent dynamical transition in protein: protein interactions at approximately 240 K
Vandana Kurkal-Siebert1, Ritesh Agarwal, Jeremy C Smith
1Interdisciplinary Center for Scientific Computing (IWR), University of Heidelberg, Im Neuenheimer Feld 368, D-69120 Heidelberg, Germany.
Abstract:
Interprotein motions in low and fully hydrated carboxymyoglobin crystals are investigated using molecular dynamics simulation. Below approximately 240 K, the calculated dynamic structure factor exhibits a peak arising from interprotein vibration. Above approximately 240 K, the intermolecular fluctuations of the fully hydrated crystal increase drastically, whereas the low-hydration model exhibits no transition. Autocorrelation function analysis shows the transition to be dominated by the activation of diffusive intermolecular motion. The potential of mean force for the interaction remains quasiharmonic. The results indicate useful experimental avenues on protein:protein interactions to be explored using next-generation neutron sources.
Related Concept Videos
Noncovalent Attractions in Biomolecules
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Transition State Theory
Phase Transitions: Melting and Freezing
Cooperative Allosteric Transitions
Protein Folding
Protein Folding
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...

