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Updated: Jul 4, 2026

Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid for the Detection of Central Nervous System Pathogens
Published on: April 17, 2026
[A pilot study on the proteome of cerebrospinal fluid of Staphylococcus epidermidis meningitis in children]
Jing Peng1, Fei Yin, Hong-Yuan Zhang
1Department of Pediatrics, Xiangya Hospital of Central South University, Changsha 410008, China.
Objective:
Bacterial meningitis is a kind of central nervous system infection with a high incidence, disability and fatality in children. Prompt diagnosis and treatment are associated with an improved prognosis. Low positive rate of bacterial cultures of the cerebrospinal fluid (CSF) makes it difficult to make a definite diagnosis. This experiment aimed to investigate a proteome profile of normal CSF of Chinese children by two-dimensional polyacrydamide gel electrophoresis (2-DE), and to sieve the disease-specific proteins of Staphylococcus epidermidis meningitis (SeM) to provide basis for early diagnosis and treatment of SeM.
Methods:
Four mL CSF samples were obtained respectively from SeM and normal children. The separated proteins with immobile pH gradient (IPG) 2-DE technology and protein spots were visualized by Coomassie Brilliant Blue staining. The stained 2-DE gels were scanned on the Imagescanner and pictures were obtained through Labscan software. The images were analyzed with PDQuest software and the differences of protein spots were compared between the SeM and normal children.
Results:
Mean protein spots of the 2-DE gels were 438 and 425 in the SeM and normal groups respectively. Twenty-five protein spots only occurred in normal CSF and 12 spots only occurred in the SeM group. The expression of 6 protein spots showed up-regulation and that of 19 showed down-regulation in the SeM group compared with that in the normal group.
Conclusions:
A 2-DE profile of CSF proteome was successfully established in SeM and normal children through proteomic technique. By the differentiated analysis of these CSF 2-DE gels, the differences of CSF proteome profiles were found between SeM and normal children. Future analysis and identification of these spots will contribute to find out the disease specific proteins of SeM and to provide basis for early diagnosis and therapy of this disorder.
Insights
This study analyzed cerebrospinal fluid (CSF) proteome profiles in children with Staphylococcus epidermidis meningitis (SeM) and healthy children. Differences in protein expression were identified, offering potential biomarkers for early SeM diagnosis.
Area of Science:
- Proteomics
- Neuroscience
- Pediatrics
Context:
- Bacterial meningitis, particularly Staphylococcus epidermidis meningitis (SeM), poses significant risks to children.
- Accurate diagnosis is crucial for effective treatment and improved outcomes.
- Cerebrospinal fluid (CSF) culture limitations hinder early diagnosis.
Purpose:
- To establish a proteome profile of normal pediatric CSF.
- To identify disease-specific protein differences in SeM using two-dimensional polyacrylamide gel electrophoresis (2-DE).
- To provide a basis for early diagnosis and treatment of SeM.
Summary:
- Two-dimensional polyacrylamide gel electrophoresis (2-DE) was employed to analyze CSF proteome profiles in SeM and normal pediatric groups.
- Significant differences in protein spot expression were observed between the SeM and normal groups.
- The SeM group exhibited unique protein spots and altered expression levels compared to the normal group.
Impact:
- Successfully established a reference 2-DE proteome profile for pediatric CSF.
- Identified distinct proteomic differences between SeM and normal CSF.
- Lays the groundwork for identifying novel biomarkers for early SeM diagnosis and therapeutic strategies.
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