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Related Concept Videos

Physical Properties of Alkanes02:33

Physical Properties of Alkanes

Alkanes are nonpolar molecules due to the presence of only carbon and hydrogen atoms. The electronegativity difference between carbon and hydrogen is minimal, and hence alkanes have a zero dipole moment. This leads to the presence of only dispersion forces between the molecules. The strength of dispersion forces is dependent on the surface area of the molecules on which they act. Since the surface area increases with the molecular length for straight-chain alkanes, the dispersion forces also...
Calculations of Electric Potential II01:27

Calculations of Electric Potential II

An electric dipole is a system of two equal but opposite charges, separated by a fixed distance. This system is used to model many real-world systems, including atomic and molecular interactions. One of these systems is the water molecule, but only under certain circumstances. These circumstances are met inside a microwave oven, where electric fields with alternating directions make the water molecules change orientation. This vibration is equivalent to heat at the molecular level.
Consider a...
Structure and Bonding of Alkenes02:47

Structure and Bonding of Alkenes

Olefins, which are unsaturated hydrocarbons containing one or more carbon–carbon double bonds, are broadly divided into alkenes and cycloalkenes. The general chemical formula of an alkene is CnH2n.
Doubly bonded carbons are sp2 hybridized and have a trigonal planar geometry. The double bond is composed of a σ bond formed by the overlap of hybrid orbitals and a π bond produced by the lateral overlap of unhybridized 2p orbitals on both the carbons. Each carbon atom is bonded to two hydrogen atoms...
Inductive Effects on Chemical Shift: Overview01:27

Inductive Effects on Chemical Shift: Overview

The protons in unsubstituted alkanes are strongly shielded with chemical shifts below 1.8 ppm. Methine, methylene, and methyl protons appear at approximately 1.7, 1.2 and 0.7 ppm, while the proton signal from methane appears at 0.23 ppm. An electronegative substituent, such as chlorine, withdraws the electron density from the protons, increasing their chemical shift. Progressive substitution of the hydrogens in methane by chlorine shifts the proton signals increasingly downfield, to 3.05 ppm in...
Potential Due to a Polarized Object01:29

Potential Due to a Polarized Object

A neutral atom consists of a positively charged nucleus surrounded by a negatively charged electron cloud. When placed in an external electric field, the external electric force pulls the electrons and nucleus apart, opposite to the intrinsic attraction between the nucleus and the electrons. The opposing forces balance each other with a slight shift between the center of masses of the nucleus and the electron cloud, resulting in a polarized atom. On the other hand, a few molecules, like water,...
Relative Stabilities of Alkenes01:59

Relative Stabilities of Alkenes

The relative stability of alkenes can be determined by comparing their heats of hydrogenation. The lower heat of hydrogenation indicates the more stable alkene.  The three main factors determining the relative stability of alkenes are i) the number of substituents attached to the double-bond carbon atoms, ii) hyperconjugation, and iii) the stereochemistry of the double bond.

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Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
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Revised charge equilibration potential for liquid alkanes.

Joseph E Davis1, G Lee Warren, Sandeep Patel

  • 1Department of Chemistry and Biochemistry, University of Delaware, 238 Brown Laboratory Newark, Delaware 19716, USA.

The Journal of Physical Chemistry. B
|June 24, 2008
PubMed
Summary
This summary is machine-generated.

This study revises a liquid alkane force field, improving its accuracy for predicting molecular properties. The enhanced model better describes electrostatic interactions and van der Waals forces for alkanes.

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Area of Science:

  • Computational Chemistry
  • Molecular Modeling
  • Physical Chemistry

Background:

  • Existing liquid alkane force fields have limitations in accurately describing dihedral potentials, electrostatic, and Lennard-Jones parameters.
  • Nonadditive electrostatic effects due to local polarization require advanced modeling formalisms.

Purpose of the Study:

  • To present a revised liquid alkane force field incorporating charge equilibration for nonadditive electrostatics.
  • To address and rectify deficiencies in dihedral, electrostatic, and Lennard-Jones parameters of a previous model.
  • To enhance the accuracy of molecular simulations for linear alkanes.

Main Methods:

  • Refinement of alkane backbone torsion potentials using high-level ab initio calculations.
  • Adjustment of electrostatic and Lennard-Jones parameters to match experimental data for hexane (polarizability, density, enthalpy of vaporization).
  • Calculation of bulk liquid properties and free energies of hydration for various linear alkanes.

Main Results:

  • The revised force field demonstrates significantly improved accuracy in predicting bulk liquid properties compared to the original model.
  • Accurate reproduction of experimental polarizability, liquid density, and vaporization enthalpy for hexane.
  • Successful calculation of densities, enthalpies of vaporization, diffusion constants, compressibilities, heat capacities, and NMR relaxation times.

Conclusions:

  • The revised liquid alkane force field provides a superior description of molecular and bulk properties.
  • This model serves as a foundation for developing polarizable force fields for lipids and membrane proteins within the CHARMM framework.
  • The improved force field enhances the predictive power of molecular simulations for alkane systems.