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GMODWeb: a web framework for the Generic Model Organism Database.

Brian D O'Connor1, Allen Day, Scott Cain

  • 1Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, California, USA. boconnor@ucla.edu.

Genome Biology
|June 24, 2008
PubMed
Summary
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The Generic Model Organism Database (GMOD) initiative developed GMODWeb to streamline the creation of model organism database (MOD) websites. This tool enhances data integration and searchability for diverse biological datasets.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Database Development

Background:

  • The Generic Model Organism Database (GMOD) initiative offers species-agnostic data models and software for curated model organism data.
  • Developing specialized websites for model organism databases (MODs) can be time-consuming and resource-intensive.

Purpose of the Study:

  • To introduce GMODWeb, a GMOD project aimed at accelerating the development of MOD websites.
  • To provide a framework for creating integrated and searchable MOD resources.

Main Methods:

  • GMODWeb was developed as a project within the GMOD initiative.
  • The framework utilizes the open-source Turnkey web framework for its construction.
  • The resulting websites are designed for seamless integration with existing GMOD tools.

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Main Results:

  • GMODWeb facilitates the rapid development of functional MOD websites.
  • Websites built with GMODWeb enable users to efficiently browse and search various data types.
  • The system ensures integration with other GMOD tools, enhancing data accessibility.

Conclusions:

  • GMODWeb significantly simplifies and accelerates the process of building MOD websites.
  • It promotes better data management, integration, and user accessibility for model organism research.
  • The availability of GMODWeb supports the broader GMOD initiative's goals.