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Updated: Jul 4, 2026

Isolating Interaction-Null/Impaired Mutants Using the Yeast Two-Hybrid Assay
Published on: December 29, 2023
Topoisomerase II inactivation prevents the completion of DNA replication in budding yeast
Jonathan Baxter1, John F X Diffley
1Cancer Research UK London Research Institute, Clare Hall Laboratories, South Mimms, Hertfordshire EN6 3LD, UK.
Abstract:
Type II topoisomerases are essential for resolving topologically entwined double-stranded DNA. Although anti-topoisomerase 2 (Top2) drugs are clinically important antibiotics and chemotherapies, to our knowledge, the mechanisms of cell killing by Top2 depletion and inactivation have never been directly compared. We show that depletion of Top2 protein from budding yeast cells prevents DNA decatenation during S phase. Cells complete DNA replication and enter the ensuing mitosis on schedule, suffering extensive chromosome missegregation. Cytokinesis through incompletely segregated chromosomes causes lethal DNA damage. By contrast, expression of catalytically inactive Top2 causes a stable G2 arrest requiring an intact DNA damage checkpoint. Checkpoint activation correlates with an inability to complete DNA replication, resulting in hypercatenated, gapped daughter DNA molecules. Thus, Top2 depletion and inactivation kill cells by different mechanisms, which has implications for understanding the nature of the catenation checkpoint, how DNA replication terminates, how anti-Top2 drugs work, and how new drugs might be designed.
Insights
Depleting type II topoisomerase (Top2) causes DNA damage during mitosis, while inactivating it leads to a G2 arrest. These distinct mechanisms highlight differences in how Top2 loss impacts cell survival and DNA replication.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Type II topoisomerases (Top2) are crucial for decatenating double-stranded DNA.
- Top2 inhibitors are vital in cancer chemotherapy and antibiotic treatments.
- Mechanisms of cell death from Top2 depletion versus inactivation remain unclear.
Purpose of the Study:
- To compare the distinct mechanisms of cell killing caused by Top2 depletion and catalytic inactivation.
- To elucidate the cellular consequences of impaired DNA decatenation and replication.
- To investigate the role of DNA damage checkpoints in response to Top2 dysfunction.
Main Methods:
- Utilized budding yeast as a model organism.
- Employing Top2 protein depletion and expression of catalytically inactive Top2 mutants.
- Analyzing DNA decatenation, chromosome segregation, DNA replication, and cell cycle progression.
- Investigating DNA damage checkpoint activation.
Main Results:
- Top2 depletion prevented DNA decatenation, leading to chromosome missegregation and lethal DNA damage during cytokinesis.
- Catalytically inactive Top2 induced a stable G2 arrest dependent on an intact DNA damage checkpoint.
- Inactive Top2 expression resulted in failed DNA replication and daughter DNA molecules with catenations and gaps.
Conclusions:
- Top2 depletion and inactivation trigger divergent cell-lethal pathways.
- Findings offer insights into the DNA replication termination, catenation checkpoint, and anti-Top2 drug mechanisms.
- This research informs the design of novel anti-Top2 therapeutic strategies.
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