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Assessment of Immunologically Relevant Dynamic Tertiary Structural Features of the HIV-1 V3 Loop Crown R2 Sequence by ab initio Folding
Published on: September 15, 2010
HIV-2 neutralization by intact V3-specific Fab fragments
Samer Sourial1, Charlotta Nilsson
1Department of Microbiology, Tumor and Cellbiology, Karolinska Institute, Stockholm, Sweden. samer.sourial@astrazeneca.com
Smaller antibody fragments (Fab) effectively neutralized HIV-2 infection, unlike their larger monoclonal antibody (mAb) counterparts. This suggests steric hindrance limits whole mAb access to the V3 region, crucial for blocking viral entry.
Area of Science:
- Immunology
- Virology
- Molecular Biology
Background:
- The V3 region of human immunodeficiency virus (HIV) surface glycoproteins (gp120 for HIV-1, gp125 for HIV-2) is a key target for neutralizing antibodies.
- Understanding antibody structure-function relationships is critical for developing effective HIV therapies.
Purpose of the Study:
- To characterize conformation-sensitive (3C4) and linear site-specific (7C8) anti-HIV-2 V3 monoclonal antibodies (mAbs) and their Fab fragments.
- To evaluate the neutralization capacity of these antibodies and fragments against HIV-2 isolates.
Main Methods:
- Purification and characterization of anti-HIV-2 V3 monoclonal antibodies (mAbs) and their papain-generated Fab fragments.
- In vitro neutralization assays using HIV-2 isolates, SIVsm, and subtype A and B HIV-2 isolates.
- Sequence analysis of the hypervariable regions, including the third complementarity-determining region of the heavy chain (CDRH3), of the Fab fragments.
Main Results:
- Neither purified 7C8 nor 3C4 mAbs neutralized HIV-2 in vitro.
- Intact Fab fragments from both 7C8 and 3C4 mAbs effectively blocked in vitro infection of HIV-2 isolates.
- The conformation-sensitive 3C4 Fab fragment demonstrated neutralization against both subtype A and B HIV-2 isolates and SIVsm.
- Sequence analysis revealed that the CDRH3 regions of 7C8 and 3C4 Fabs were shorter than those of previously characterized neutralizing antibodies.
Conclusions:
- The larger size of whole monoclonal antibodies (mAbs) likely causes steric hindrance, preventing effective neutralization of HIV-2 by preventing access to the V3 region.
- The smaller size of Fab fragments allows for better access to the V3 epitope on the HIV-2 virion surface, enabling neutralization.
- These findings highlight the importance of antibody fragment size in achieving neutralization of certain viral targets like HIV-2.
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