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Related Concept Videos

Protein Denaturation01:28

Protein Denaturation

The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...
Protein Folding Quality Check in the RER01:29

Protein Folding Quality Check in the RER

ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
Bacterial Protein Maturation01:26

Bacterial Protein Maturation

Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
Protein Folding01:25

Protein Folding

Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Folding01:22

Protein Folding

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Updated: Jul 2, 2026

Click-Chemistry Based Fluorometric Assay for Apolipoprotein N-acyltransferase from Enzyme Characterization to High-Throughput Screening
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LDL protein nitration: implication for LDL protein unfolding.

Ryan T Hamilton1, Liana Asatryan, Jon T Nilsen

  • 1Department of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, CA 90089, USA.

Archives of Biochemistry and Biophysics
|August 21, 2008
PubMed
Summary

Modified LDL (LDL(-)) shows protein unfolding and increased uptake by endothelial cells, driven by lipid peroxidation and nitration, activating scavenger receptors in atherosclerosis.

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Nitropeptide Profiling and Identification Illustrated by Angiotensin II
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Published on: June 16, 2019

Area of Science:

  • Biochemistry
  • Cardiovascular Biology
  • Molecular Medicine

Background:

  • Modified low-density lipoprotein (LDL) is central to atherosclerosis development.
  • In vivo modified LDL (LDL(-)) exhibits electro-negativity, peroxidized lipids, and unfolded apoB-100.
  • Understanding LDL(-) modifications is crucial for elucidating atherosclerosis mechanisms.

Purpose of the Study:

  • To characterize specific protein modifications and conformational changes in LDL(-).
  • To assess the functional significance of these changes in endothelial cell interactions.
  • To investigate the role of specific receptors in modified LDL binding and uptake.

Main Methods:

  • Liquid chromatography/tandem mass spectrometry (LC/MS/MS) for protein modification analysis.
  • Circular dichroism (CD) spectroscopy for conformational analysis.
  • Binding and uptake experiments using bovine aortic endothelial cells (BAEC).

Main Results:

  • LDL(-) displayed increased nitrotyrosine, lipid peroxides, and cysteine oxidation compared to native LDL.
  • LC/MS/MS identified tyrosine nitration and cysteine oxidation in apoB-100.
  • CD analysis revealed reduced alpha-helical content and increased beta-sheet structure in LDL(-), indicating protein unfolding.
  • Peroxynitrite (ONOO(-)) treatment mimicked these modifications and conformational changes.
  • Both LDL(-) and ONOO(-)-treated LDL showed significantly increased binding and uptake by BAEC.
  • Modified LDL uptake was mediated primarily by scavenger receptors (LOX-1, CD36, SR-A), with minimal LDL-R involvement.

Conclusions:

  • Lipid peroxidation and protein nitration drive apoB-100 unfolding in LDL(-).
  • Protein unfolding increases LDL binding and uptake by endothelial cells.
  • Scavenger receptors are key mediators of modified LDL uptake in atherosclerosis.
  • These findings offer insights into the pathogenesis of atherosclerosis.