Discovery of amido-benzisoxazoles as potent c-Kit inhibitors

Roxanne K Kunz1, Shannon Rumfelt, Ning Chen

  • 1Department of Medicinal Chemistry, Amgen Inc., One Amgen Center Drive, Thousand Oaks, CA 91320-1799, USA. kunz@amgen.com

Insights

Researchers developed novel c-Kit inhibitors for treating cancers and mast cell diseases. These inhibitors target c-Kit signaling, offering potential therapeutic advantages with fewer side effects.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Pharmacology

Background:

  • The receptor tyrosine kinase c-Kit plays a crucial role in various human diseases, including cancers and mast cell disorders.
  • Current treatments for c-Kit-associated diseases often involve multi-kinase inhibitors, which have shown efficacy in gastrointestinal stromal tumors and mastocytosis.
  • Targeted inhibition of c-Kit offers potential for improved therapeutic outcomes and reduced off-target effects, particularly for non-oncology applications.

Purpose of the Study:

  • To describe a new structural class of c-Kit inhibitors.
  • To evaluate the in vitro potency and kinase selectivity of these novel inhibitors.
  • To elucidate the binding mode of the new c-Kit inhibitors.

Main Methods:

  • Synthesis and characterization of a novel class of c-Kit inhibitors.
  • In vitro biochemical assays to determine c-Kit inhibitory potency.
  • Kinase panel screening to assess selectivity against other kinases.
  • Co-crystallography or molecular modeling to determine the binding mode.

Main Results:

  • Identification of a new structural class of potent c-Kit inhibitors.
  • Demonstration of high selectivity for c-Kit over a broad range of other kinases.
  • Elucidation of the specific binding interactions within the c-Kit kinase domain.

Conclusions:

  • The novel c-Kit inhibitors represent a promising new therapeutic strategy.
  • Targeted inhibition of c-Kit may offer advantages over current multi-kinase inhibitors.
  • Further investigation into these inhibitors is warranted for potential clinical applications.

Related Concept Videos

Enzyme Inhibition01:30

Enzyme Inhibition

Inhibitors are molecules that reduce enzyme activity by binding to the enzyme. In a normally functioning cell, enzymes are regulated by a variety of inhibitors. Drugs and other toxins can also inhibit enzymes. Some inhibitors bind to the enzyme’s active site, while others inhibit enzymatic activity by binding to other sites on the protein structure.
Inhibition of Cdk Activity02:34

Inhibition of Cdk Activity

The orderly progression of the cell cycle depends on the activation of Cdk protein by binding to its cyclin partner. However, the cell cycle must be restricted when undergoing abnormal changes. Most cancers correlate to the deregulated cell cycle, and since Cdks are a central component of the cell cycle, Cdk inhibitors are extensively studied to develop anticancer agents. For instance, cyclin D associates with several Cdks, such as Cdk 4/6, to form an active complex. The cyclin D-Cdk4/6 complex...
Aryldiazonium Salts to Azo Dyes: Diazo Coupling01:11

Aryldiazonium Salts to Azo Dyes: Diazo Coupling

The reaction of weakly electrophilic aryldiazonium (also called arenediazonium) salts with highly activated aromatic compounds leads to the formation of products with an —N=N— link, called an azo linkage. This reaction, presented in Figure 1, is known as diazo coupling and occurs without the loss of the nitrogen atoms of the aryldiazonium salt. Highly activated aromatic compounds such as phenols or arylamines favor the diazo coupling reaction. The coupling generally occurs at the para position.
Inhibitors of Bacterial Protein Synthesis01:25

Inhibitors of Bacterial Protein Synthesis

Aminoglycosides constitute a highly potent class of bactericidal antibiotics that exert their antimicrobial effects by targeting the bacterial ribosome, specifically disrupting protein synthesis. These polycationic molecules consist of amino-modified sugars linked via glycosidic bonds to an aminocyclitol core such as 2-deoxystreptamine or streptamine. Their strong positive charges facilitate tight binding to the negatively charged phosphate backbone of ribosomal RNA (rRNA), primarily at the 16S...
Inhibitors of Bacterial DNA Synthesis01:28

Inhibitors of Bacterial DNA Synthesis

Bacterial pathogens depend on precise and efficient DNA replication to sustain infection. Two type II topoisomerases—DNA gyrase and topoisomerase IV—are critical to this process, as they resolve DNA supercoiling and unlink chromosomes during replication. Fluoroquinolones, synthetic derivatives of quinolones, exploit this mechanism by stabilizing the transient DNA–enzyme cleavage complex, preventing strand religation, and causing lethal double-strand breaks. These antibiotics are selectively...