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Related Concept Videos

Structures of Carboxylic Acid Derivatives01:28

Structures of Carboxylic Acid Derivatives

Structure of Carboxylic Acid Derivatives
Carboxylic acid derivatives contain an acyl group attached to a heteroatom such as chlorine, oxygen, or nitrogen. The carbonyl carbon and oxygen are both sp2-hybridized with an unhybridized p orbital.
The three sp2 orbitals of the carbonyl carbon form three σ bonds, one each with the carbonyl oxygen, the α carbon, and the heteroatom, whereas the other two sp2 orbitals of the carbonyl oxygen are occupied by the lone pairs. Further, the unhybridized p...
Structure of Amines01:19

Structure of Amines

The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are illustrated in Figure...
NMR Spectroscopy Of Amines01:19

NMR Spectroscopy Of Amines

In proton NMR spectroscopy, primary amines and secondary amines showcase their N–H protons as a broad signal in the chemical shift range between δ 0.5 and 5 ppm. The exact position in this range depends on several factors, including sample concentration, hydrogen bonding, and the type of solvent used. Since amine protons undergo fast proton exchange in solution, the protons are labile and therefore do not participate in any splitting with adjacent protons. Thus, the observed peak is broad and...
IR Spectrum Peak Splitting: Symmetric vs Asymmetric Vibrations01:08

IR Spectrum Peak Splitting: Symmetric vs Asymmetric Vibrations

Identical bonds within a polyatomic group can stretch symmetrically (in-phase) or asymmetrically (out-of-phase). Similar to hydrogen bonding, these vibrations also influence the shape of the IR peak. Generally, asymmetric stretching frequencies are higher than symmetric stretching frequencies. For example, primary amines exhibit two distinct IR peaks between 3300–3500 cm−1 corresponding to the symmetric and asymmetric N-H stretching, while secondary amines exhibit a single stretching vibration...
¹H NMR: Long-Range Coupling01:27

¹H NMR: Long-Range Coupling

The coupling interactions of nuclei across four or more bonds are usually weak, with J values less than 1 Hz. While these are usually not observed in spectra, the presence of multiple bonds along the coupling pathway can result in observable long-range coupling.
In alkenes, spin information is communicated via σ–π overlap, as seen in allylic (four-bond) and homoallylic (five-bond) couplings. These coupling interactions are stronger when the σ bond is parallel to the alkene π orbitals.
Structures of Aldehydes and Ketones01:04

Structures of Aldehydes and Ketones

Vanillin—a flavoring agent in vanilla, cinnamaldehyde—a molecule responsible for the distinct smell of cinnamon, and acetone—a strong-smelling ingredient in nail polish removers, all belong to a class of carbonyl compounds called aldehydes and ketones (Figure 1). Although both aldehydes and ketones contain the characteristic carbonyl (C=O) bond, their chemical structures vary with respect to the groups directly attached to the carbonyl carbon.
In aldehydes (Figures 1a and 1b), the carbonyl...

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Related Experiment Video

Updated: Jun 28, 2026

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR
14:44

Structure and Coordination Determination of Peptide-metal Complexes Using 1D and 2D 1H NMR

Published on: December 16, 2013

Orthogonal dipolar interactions between amide carbonyl groups.

Felix R Fischer1, Peter A Wood, Frank H Allen

  • 1Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH-Hönggerberg, HCI, CH-8093 Zurich, Switzerland.

Proceedings of the National Academy of Sciences of the United States of America
|November 5, 2008
PubMed
Summary
This summary is machine-generated.

This study quantifies orthogonal amide C=O bond dipole interactions, revealing their significant stabilizing effect in molecular structures. These findings offer insights for crystal design and improving drug-target binding.

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Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates
06:35

Construction and Systematical Symmetric Studies of a Series of Supramolecular Clusters with Binary or Ternary Ammonium Triphenylacetates

Published on: February 15, 2016

Area of Science:

  • Chemical Physics
  • Structural Biology
  • Crystallography

Background:

  • Orthogonal dipolar interactions between amide C=O bonds are prevalent in various molecular structures.
  • Understanding these interactions is crucial for predicting and controlling molecular assembly.

Purpose of the Study:

  • To experimentally quantify the energetic contribution of orthogonal amide C=O...C=O dipolar interactions.
  • To assess the influence of solvent polarity on these interactions.

Main Methods:

  • Utilized a molecular torsion balance as a model system.
  • Applied a thermodynamic double-mutant cycle for energy determination.
  • Performed high-level intermolecular perturbation theory (IMPT) calculations.

Main Results:

  • Determined stabilizing free interaction enthalpies of -2.73 kJ mol(-1) in various solvents.
  • Calculations predicted a favorable gas-phase interaction energy of -9.71 kJ mol(-1).
  • Interaction strength is comparable to C-H...pi and pi-pi interactions.

Conclusions:

  • Orthogonal amide C=O dipolar interactions provide significant stabilization.
  • These interactions are valuable for crystal engineering and enhancing ligand-protein binding in drug discovery.