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Updated: Jun 27, 2026

Transmitochondrial Cybrid Generation Using Cancer Cell Lines
Published on: March 17, 2023
Mitochondrial DNA is a direct target of anti-cancer anthracycline drugs
1University of Oxford, Nuffield Department of Obstetrics and Gynaecology, The Womens Centre, John Radcliffe Hospital, Oxford OX3 9DU, UK.
Abstract:
The anthracyclines, such as doxorubicin (DXR), are potent anti-cancer drugs but they are limited by their clinical toxicity. The mechanisms involved remain poorly understood partly because of the difficulty in determining sub-cellular drug localisation. Using a novel method utilising the fluorescent DNA dye PicoGreen, we found that anthracyclines intercalated not only into nuclear DNA but also mitochondrial DNA (mtDNA). Intercalation of mtDNA by anthracyclines may thus contribute to the marked mitochondrial toxicity associated with these drugs. By contrast, ethidium bromide intercalated exclusively into mtDNA, without interacting with nuclear DNA, thereby explaining why mtDNA is the main target for ethidium. By exploiting PicoGreen quenching we also developed a novel assay for quantification of mtDNA levels by flow-cytometry, an approach which should be useful for studies of mitochondrial dysfunction. In summary our PicoGreen assay should be useful to study drug/DNA interactions within live cells, and facilitate therapeutic drug monitoring and kinetic studies in cancer patients.
Insights
Anthracyclines like doxorubicin intercalate into both nuclear and mitochondrial DNA, potentially explaining their toxicity. A new PicoGreen assay aids in studying these drug-DNA interactions and mitochondrial dysfunction.
Area of Science:
- Molecular Biology
- Pharmacology
- Cell Biology
Background:
- Anthracyclines are effective anti-cancer drugs but exhibit significant clinical toxicity.
- Understanding the sub-cellular localization of these drugs is crucial for elucidating their mechanisms of action and toxicity.
- Current methods for determining drug localization are limited.
Purpose of the Study:
- To investigate the sub-cellular localization of anthracyclines using a novel fluorescent DNA dye.
- To explore the interaction of anthracyclines with nuclear and mitochondrial DNA.
- To develop a new assay for quantifying mitochondrial DNA (mtDNA) levels.
Main Methods:
- Utilized the fluorescent DNA dye PicoGreen to study drug-DNA interactions within live cells.
- Investigated the intercalation of anthracyclines and ethidium bromide into nuclear DNA and mtDNA.
- Developed a novel flow-cytometry-based assay using PicoGreen quenching for mtDNA quantification.
Main Results:
- Anthracyclines were found to intercalate into both nuclear DNA and mitochondrial DNA (mtDNA).
- Ethidium bromide selectively intercalated into mtDNA, not nuclear DNA.
- A new assay for quantifying mtDNA levels using PicoGreen quenching was successfully developed.
Conclusions:
- Anthracycline intercalation into mtDNA may contribute to their observed mitochondrial toxicity.
- The developed PicoGreen assay is a valuable tool for studying drug-DNA interactions in live cells.
- This assay can facilitate therapeutic drug monitoring and kinetic studies in cancer patients.
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