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Updated: Jun 27, 2026

Scanning Transmission Electron Microscopy Tomography in Virology: 3D Imaging of High-pressure Frozen, Freeze-substituted Samples
Published on: August 6, 2025
Scanning tunneling microscopy imaging and spectroscopy of a single viologen molecule
Nam-Suk Lee1, Chang-Heon Yang, Won-Suk Choi
1Department of Electrical Engineering and NTRC, Dong-A University, Busan 604-714, Korea.
Abstract:
A low-temperature ultrahigh-vacuum scanning tunneling microscope (UHV-STM) was used to image viologen (N-methyl-N'-di (8-mercaptooctyl)-4,4'-bipyridinium; HSC8VC8SH) molecules and to perform local spectroscopic measurements on these molecules. Self-assembly of viologen molecules was conducted on Au (111), which had been thermally deposited onto freshly cleaved, heated mica. Here, we demonstrate a novel SAM matrix appropriate for the isolation of viologen molecules composed of octanethiol (C8) in which HSC8VC8SH was inserted at defects in the molecular lattice. The isolated single molecules of viologen inserted in the SAM matrix were observed as protrusions in STM topography using a constant current mode. STM images at 298 K showed protrusions with a topographic height of about 2.71 nm (HSC8VC8SH) with viologen molecules that self-assembled on the substrate. The current-voltage (I-V) characteristics were measured while the electrical properties of the formed monolayer were scanned using scanning tunneling spectroscopy (STS). We found the high peak current-like rectification at +1.14 V (HSC8VC8SH). The rectification ratios, RR = J (at +2.5 V)/J (at -2.5 V), are in the range of 4.47.
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