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Updated: Jun 27, 2026

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Quantifying Microglia Morphology from Photomicrographs of Immunohistochemistry Prepared Tissue Using ImageJ
Published on: June 5, 2018
Quantitative morphometric measurements using site selective image cytometry of intact tissue
Hyuk-Sang Kwon1, Yoon Sung Nam, Dominika M Wiktor-Brown
1Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Journal of the Royal Society, Interface
|December 4, 2008
Summary
This study introduces site-selective two-photon tissue image cytometry to analyze rare homologous recombination (HR) events in mouse pancreas. The method efficiently identifies and characterizes recombinant cell clusters and their morphology in 3D tissue.
Area of Science:
- Biomedical Imaging
- Cell Biology
- Genetics
Background:
- Site-selective two-photon tissue image cytometry enables rare cell detection in 3D tissues.
- High-throughput quantification of cellular morphology using this technique remains undemonstrated.
Purpose of the Study:
- To apply site-selective two-photon tissue image cytometry for studying homologous recombination (HR) events in mouse pancreas.
- To develop and demonstrate high-throughput quantification of cellular morphological states in rare cell populations.
Main Methods:
- Utilized a site-selective two-photon tissue cytometer with a one-photon imaging subsystem to locate regions of interest containing rare recombinant cell clusters.
- Performed high-resolution 3D assays using two-photon microscopy within identified regions.
- Applied 3D morphology extraction algorithms to analyze image stacks.
Main Results:
- Successfully identified and quantified homologous recombination (HR) events in the pancreas of transgenic mice.
- Demonstrated the ability to analyze the frequency, distribution, and morphology of rare recombinant cell clusters.
- Showcased the efficiency of the combined low-magnification and high-resolution imaging approach for rare event detection.
Conclusions:
- Site-selective two-photon tissue image cytometry is effective for studying rare cellular events like HR in complex tissues.
- The developed methodology allows for detailed morphological analysis of rare cell populations, advancing high-throughput tissue cytometry.
- This approach provides insights into the spatial distribution and cellular characteristics of homologous recombination events in vivo.
