Related Experiment Video
Updated: Jun 27, 2026

Proton Transfer and Protein Conformation Dynamics in Photosensitive Proteins by Time-resolved Step-scan Fourier-transform Infrared Spectroscopy
Published on: June 27, 2014
Spectral diffusion induced by proton dynamics in pigment-protein complexes.
Marc Brecht1, Hauke Studier, Volker Radics
1Fachbereich Physik, Freie Universitat Berlin, Arnimalle 14, 14195 Berlin, Germany. marc.brecht@physik.fu-berlin.de
Deuteration of the solvent significantly enhances well-resolved zero-phonon lines in photosystem I fluorescence. This spectral diffusion change is attributed to exchangeable protons in the chromophore binding pocket, not chlorophyll itself.
Area of Science:
- Biophysics
- Photosynthesis research
- Spectroscopy
Background:
- Photosystem I (PSI) is crucial for light energy conversion in photosynthesis.
- Understanding the photophysics of PSI is key to optimizing light-harvesting complexes.
- Fluorescence emission provides insights into the electronic and structural dynamics of PSI.
Purpose of the Study:
- To investigate the impact of solvent deuteration on the fluorescence emission of individual photosystem I complexes.
- To elucidate the role of exchangeable protons in spectral diffusion within the PSI chromophore binding pocket.
Main Methods:
- Single-molecule fluorescence spectroscopy on isolated photosystem I complexes from Synechocystis PCC 6803.
- Comparison of fluorescence emission in protonated (H2O) and deuterated (D2O) buffer solutions.
- Analysis of zero-phonon lines and broad intensity distributions in fluorescence spectra.
Main Results:
- Solvent deuteration significantly reduced spectral diffusion rates in PSI fluorescence.
- An increase in the number and resolution of zero-phonon lines was observed upon deuteration.
- Changes in spectral diffusion were linked to exchangeable protons from amino acids and structural water, not chlorophyll a.
Conclusions:
- Exchangeable protons in the PSI chromophore binding pocket play a critical role in spectral diffusion.
- Deuteration of these protons effectively suppresses spectral diffusion, leading to sharper fluorescence features.
- This study highlights the importance of the local environment and proton dynamics in PSI photophysics.
Related Concept Videos
Protein Dynamics in Living Cells
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
Protein Diffusion in the Membrane
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)

