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Updated: Jun 27, 2026

Study of the DNA Damage Checkpoint using Xenopus Egg Extracts
Published on: November 5, 2012
Activation of ATM depends on chromatin interactions occurring before induction of DNA damage
Yong-Chul Kim1, Gabi Gerlitz, Takashi Furusawa
1Laboratory of Metabolism, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Abstract:
Efficient and correct responses to double-stranded breaks (DSB) in chromosomal DNA are crucial for maintaining genomic stability and preventing chromosomal alterations that lead to cancer. The generation of DSB is associated with structural changes in chromatin and the activation of the protein kinase ataxia-telangiectasia mutated (ATM), a key regulator of the signalling network of the cellular response to DSB. The interrelationship between DSB-induced changes in chromatin architecture and the activation of ATM is unclear. Here we show that the nucleosome-binding protein HMGN1 modulates the interaction of ATM with chromatin both before and after DSB formation, thereby optimizing its activation. Loss of HMGN1 or ablation of its ability to bind to chromatin reduces the levels of ionizing radiation (IR)-induced ATM autophosphorylation and the activation of several ATM targets. IR treatments lead to a global increase in the acetylation of Lys 14 of histone H3 (H3K14) in an HMGN1-dependent manner and treatment of cells with histone deacetylase inhibitors bypasses the HMGN1 requirement for efficient ATM activation. Thus, by regulating the levels of histone modifications, HMGN1 affects ATM activation. Our studies identify a new mediator of ATM activation and demonstrate a direct link between the steady-state intranuclear organization of ATM and the kinetics of its activation after DNA damage.
Insights
The nucleosome-binding protein HMGN1 optimizes the activation of ataxia-telangiectasia mutated (ATM) kinase following DNA double-stranded breaks (DSB). HMGN1 regulates ATM
Area of Science:
- Molecular Biology
- Genomics
- Cellular Biology
Background:
- Efficient DNA repair is vital for genomic stability and cancer prevention.
- Double-stranded breaks (DSB) trigger chromatin alterations and activate ATM kinase.
- The precise relationship between chromatin changes and ATM activation remains unclear.
Purpose of the Study:
- To investigate the role of HMGN1 in modulating ATM activation after DSB.
- To understand how HMGN1 influences ATM's interaction with chromatin.
- To elucidate the link between HMGN1, histone modifications, and ATM signaling.
Main Methods:
- Assessing ATM autophosphorylation and target activation after ionizing radiation (IR) in HMGN1-deficient cells.
- Analyzing global histone H3K14 acetylation levels.
- Evaluating the effect of histone deacetylase inhibitors on ATM activation.
Main Results:
- HMGN1 is essential for optimal ATM activation following DSB.
- Loss of HMGN1 or its chromatin-binding ability impairs IR-induced ATM autophosphorylation and target activation.
- IR induces HMGN1-dependent global H3K14 acetylation.
- Histone deacetylase inhibitors can restore efficient ATM activation in HMGN1-deficient cells.
Conclusions:
- HMGN1 acts as a crucial mediator in ATM activation by regulating chromatin modifications.
- HMGN1 influences the intranuclear organization of ATM, affecting its activation kinetics post-DNA damage.
- This study reveals a direct link between HMGN1, histone acetylation, and the DNA damage response pathway.
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