Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Origin of Cellular Life01:24

Origin of Cellular Life

The origin of life on Earth is a complex and enigmatic event rooted in ancient biochemical processes and geological conditions. Experimental evidence supports the hypothesis that life began with the spontaneous formation of organic molecules such as RNA nucleotides, amino acids, and lipids under early Earth conditions. Factors like volcanic activity, intense UV radiation, and a reducing atmosphere without free oxygen likely facilitated these reactions. Hydrothermal vents on the ocean floor are...
Protein Networks02:26

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Protein Networks02:26

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Levels of Organization01:09

Levels of Organization

Biological organization is the classification of biological structures, ranging from atoms at the bottom of the hierarchy to the Earth's biosphere. Each level of the hierarchy represents an increase in complexity that builds upon the previous level.Molecules Are Composed of Atoms, and Biomolecules Are Assembled from Molecules:The most basic levels include atoms, molecules, and biomolecules. Atoms, the smallest unit of ordinary matter, are composed of a nucleus and electrons. Molecules comprise...
Circuit Terminology01:14

Circuit Terminology

An electrical network is a system composed of interconnected elements, such as resistors, capacitors, inductors, and voltage or current sources. Unlike a circuit, an electrical network does not necessarily form a closed path. In other words, while all circuits can be considered networks due to their interconnected nature, not every network qualifies as a circuit.
A circuit, on the other hand, is also an interconnected system of electrical elements but must contain one or more closed paths.
Structural Organization of the Human Body: An Overview01:18

Structural Organization of the Human Body: An Overview

It is convenient to consider the body's structures in terms of fundamental levels of organization that increase in complexity: subatomic particles, atoms, molecules, organelles, cells, tissues, organs, organ systems, and organisms.
To study the chemical level of organization, scientists consider the simplest building blocks of matter: subatomic particles, atoms, and molecules. All matter in the universe is composed of one or more unique pure substances called elements, familiar examples of...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Immune biomarkers, profiles, and responses: a vaccine ontology perspective.

Journal of biomedical semantics·2026
Same author

VO: The Vaccine Ontology.

Scientific data·2026
Same author

VO: The Vaccine Ontology.

bioRxiv : the preprint server for biology·2025
Same author

Immune Biomarkers, Profiles, and Responses: A Vaccine Ontology Perspective.

bioRxiv : the preprint server for biology·2025
Same author

Rapid and non-invasive analysis of paracetamol overdose using paper arrow-mass spectrometry: a prospective observational study.

BMC medicine·2024
Same author

Correction: A novel olfactory sorting task.

European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery·2024

Related Experiment Video

Updated: Jun 27, 2026

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
07:28

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

Published on: October 19, 2021

Ontologies of cellular networks.

Robert Arp1, Barry Smith

  • 1National Center for Biomedical Ontology, University at Buffalo, Buffalo, NY 14260, USA. rarp@buffalo.edu

Science Signaling
|December 19, 2008
PubMed
Summary

This workshop introduced biomedical ontology tools and methods for cellular network research. It aimed to improve coordination among researchers working on ontologies of cellular networks.

Area of Science:

  • Biomedical Informatics
  • Computational Biology
  • Knowledge Representation

Background:

  • The National Center for Biomedical Ontology (NCBO) sponsored a workshop on "Ontologies of Cellular Networks" in March 2008.
  • The event gathered over 30 participants from diverse biomedical and bioinformatics fields.
  • The primary goal was to introduce ontology basics and foster collaboration in cellular network research.

Framework:

  • The workshop addressed fundamental questions regarding the definition and scope of ontologies.
  • It explored the concept of a biological pathway within the context of network analysis.
  • Discussions centered on defining and structuring cellular networks using ontological principles.

Implementation:

  • Participants were introduced to essential tools and methodologies for developing biomedical ontologies.

More Related Videos

Design, Surface Treatment, Cellular Plating, and Culturing of Modular Neuronal Networks Composed of Functionally Inter-connected Circuits
10:32

Design, Surface Treatment, Cellular Plating, and Culturing of Modular Neuronal Networks Composed of Functionally Inter-connected Circuits

Published on: April 15, 2015

3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding Overlapping Protocol
10:14

3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding Overlapping Protocol

Published on: May 12, 2019

Related Experiment Videos

Last Updated: Jun 27, 2026

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
07:28

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics

Published on: October 19, 2021

Design, Surface Treatment, Cellular Plating, and Culturing of Modular Neuronal Networks Composed of Functionally Inter-connected Circuits
10:32

Design, Surface Treatment, Cellular Plating, and Culturing of Modular Neuronal Networks Composed of Functionally Inter-connected Circuits

Published on: April 15, 2015

3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding Overlapping Protocol
10:14

3D Scanning Technology Bridging Microcircuits and Macroscale Brain Images in 3D Novel Embedding Overlapping Protocol

Published on: May 12, 2019

  • The workshop facilitated discussions on current practices and challenges in cellular network ontology creation.
  • Strategies for enhancing coordination and data sharing among research groups were explored.

    • Implications:

    • The workshop aimed to standardize terminology and conceptual models for cellular networks.
    • Improved coordination is expected to accelerate research in systems biology and drug discovery.
    • Establishing common ontological frameworks will facilitate data integration and analysis in biomedicine.