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Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)
Published on: November 4, 2016
Characterization of Dutch Staphylococcus aureus from bovine mastitis using a Multiple Locus Variable Number Tandem
Risma Ikawaty1, E C Brouwer, M D Jansen
1Department of Medical Microbiology, University Medical Centre Utrecht, Utrecht, The Netherlands.
Veterinary Microbiology
|December 23, 2008
Summary
Multiple Locus Variable Number Tandem Repeat Analysis (MLVA) offers a fast, cost-effective method for typing Staphylococcus aureus in bovine mastitis cases. While not as discriminatory as PFGE, MLVA provides valuable insights comparable to MLST and spa-typing.
Area of Science:
- Microbiology
- Veterinary Science
- Genetics
Background:
- Current typing methods for Staphylococcus aureus, a common cause of bovine mastitis, possess significant limitations.
- Accurate and efficient bacterial typing is crucial for epidemiological surveillance and control of mastitis outbreaks in cattle.
Purpose of the Study:
- To evaluate the efficacy of a 6-locus Multiple Locus Variable Number Tandem Repeat Analysis (MLVA) scheme for typing Staphylococcus aureus.
- To compare the discriminatory power and predictive value of MLVA against established methods like Multi Locus Sequence Typing (MLST), spa-typing, and Pulsed-Field Gel Electrophoresis (PFGE).
Main Methods:
- A 6-locus MLVA scheme was applied to 85 bovine mastitis isolates of Staphylococcus aureus.
- Typing results were compared with MLST, spa-typing, and PFGE using measures like Simpson's Index of Diversity.
- The predictive accuracy between MLVA and spa-typing was assessed using the Adjusted Rand index and Wallace's coefficient.
Main Results:
- MLVA identified 18 distinct types (MTs), demonstrating good discriminatory power (Simpson's Index: 0.781), falling between MLST and spa-typing.
- Pulsed-Field Gel Electrophoresis (PFGE) exhibited the highest discriminatory power (0.887), while spa-typing had the lowest (0.69).
- MLVA proved highly predictive for spa-type, suggesting strong concordance, and was noted for its speed and cost-effectiveness.
Conclusions:
- The evaluated MLVA scheme is a suitable, rapid, and economical method for typing bovine-associated Staphylococcus aureus.
- MLVA offers a valuable alternative for epidemiological studies, complementing other methods like PFGE and MLST.
- Understanding genetic variations, such as those near SIRU05, is key to optimizing PCR-based typing strategies.
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