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Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
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Related Experiment Video

Updated: Jun 26, 2026

Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles
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Published on: July 5, 2016

Three-dimensional electron microscopy of individual nanoparticles.

Konrad Jarausch1, Donovan N Leonard

  • 1Hitachi High-Technologies Corporation, Pleasanton, CA 94588, USA. konradjarausch@yahoo.com

Journal of Electron Microscopy
|December 26, 2008
PubMed
Summary

Researchers developed a new protocol for 3D analysis of nanoparticles using a customized electron microscope rotation holder. This method enables detailed structural and chemical characterization of nanomaterials, advancing nanotechnology research.

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Last Updated: Jun 26, 2026

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Area of Science:

  • Nanotechnology
  • Materials Science
  • Electron Microscopy

Background:

  • Advanced characterization of 3D nanomaterials is crucial for nanotechnology development.
  • Existing methods face limitations in analyzing complex nanoparticle structures and chemistries.

Purpose of the Study:

  • To present a novel protocol for optimizing rotation holders for 3D structural and chemical analysis of nanoparticles.
  • To enable detailed characterization of nanoparticle morphology, properties, and composition in three dimensions.

Main Methods:

  • Combined focused ion beam (FIB) milling, thin film deposition, and solution chemistry to customize rotation holder stubs.
  • Utilized scanning transmission electron microscope (STEM)/transmission electron microscope (TEM) with a rotation holder for 3D imaging.
  • Employed electron energy-loss spectroscopy (EELS) spectrum imaging for chemical analysis and tomography for 3D reconstruction.

Main Results:

  • Successfully optimized rotation holder stubs for 3D STEM analysis of core-shell nanoparticles.
  • Characterized individual core-shell nanoparticle morphology, optoelectronic properties, and chemical composition in 3D.
  • Eliminated missing wedge artifacts through 360-degree rotation imaging and determined local material properties using EELS.

Conclusions:

  • The developed protocol facilitates comprehensive 3D structural and chemical analysis of nanoparticles.
  • This approach minimizes substrate effects by cantilevered nanoparticle analysis over vacuum.
  • The protocol is adaptable for 3D TEM/STEM analysis of diverse nanomaterial systems.