Related Experiment Video
Updated: Jun 26, 2026

Membrane Transport Processes Analyzed by a Highly Parallel Nanopore Chip System at Single Protein Resolution
Published on: August 16, 2016
Molecular simulation of ion transport in silica nanopores
Katsuhiro Shirono1, Naoya Tatsumi, Hirofumi Daiguji
1National Institute of Advanced Industrial Science and Technology, Tsukuba 305-8564, Japan.
Abstract:
Ion distribution and transport of KCl aqueous solutions at the junction of hydrophobic and hydrophilic regions inside silica nanopores were studied by using two kinds of molecular simulation: grand canonical Monte Carlo (GCMC) simulations and nonequilibrium molecular dynamics (NEMD) simulations. The nanopores were 2 nm diameter silica pores in which surface functional groups, -SiOH, had been modified by hydrophobic surface functional groups, -SiCH(3), within three different lengths along the pore direction (z-direction), L(z0) = 0, 2, and 4 nm. If L(z0) is long enough, water could not enter the hydrophobic region, but for all L(z0) studied here, water entered the hydrophobic region. When an external electric field was applied along the z-direction, ions could not pass through the hydrophobic region when the external electric field was less than a threshold level, E(0), whereas the ionic current increased relatively linearly with increasing electric field strength above E(0). In 2 nm diameter fluidic pores, the electrical potential barrier appeared at the junction between the hydrophilic and hydrophobic regions due to the difference in dipole moment of the surface functional groups, although the overall surface charge of the pore was neutral. This junction formed an electrical potential threshold, and the ionic current could be modulated by adjusting the external electric field.
Related Concept Videos
Pore Transport and Ion-Pair Transport
Pore transport, also known as convective transport, is a process where small molecules like urea, water, and sugars rapidly cross cell membranes as though there were channels or pores in the membrane. Although direct microscopic evidence is limited but the concept of pores or channels is widely accepted based on physiological evidence. Despite the lack of direct microscopic...
Facilitated Transport
The Significance of Membrane Transport
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
Ion Channels
Ion channels are specialized integral membrane proteins on the plasma membrane that allow specific...

