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Updated: Jun 26, 2026

Comparative Strategies for Ubiquitination Detection in Mammalian Cell Lysates Using SMAD2/SMURF2 as a Model
Published on: April 17, 2026
FAM/USP9x, a deubiquitinating enzyme essential for TGFbeta signaling, controls Smad4 monoubiquitination
Sirio Dupont1, Anant Mamidi, Michelangelo Cordenonsi
1Department of Histology, Microbiology, and Medical Biotechnologies, University of Padua School of Medicine, viale Colombo 3, 35131 Padua, Italy.
Abstract:
The assembly of the Smad complex is critical for TGFbeta signaling, yet the mechanisms that inactivate or empower nuclear Smad complexes are less understood. By means of siRNA screen we identified FAM (USP9x), a deubiquitinase acting as essential and evolutionarily conserved component in TGFbeta and bone morphogenetic protein signaling. Smad4 is monoubiquitinated in lysine 519 in vivo, a modification that inhibits Smad4 by impeding association with phospho-Smad2. FAM reverts this negative modification, re-empowering Smad4 function. FAM opposes the activity of Ectodermin/Tif1gamma (Ecto), a nuclear factor for which we now clarify a prominent role as Smad4 monoubiquitin ligase. Our study points to Smad4 monoubiquitination and deubiquitination as a way for cells to set their TGFbeta responsiveness: loss of FAM disables Smad4-dependent responses in several model systems, with Ecto being epistatic to FAM. This defines a regulative ubiquitination step controlling Smads that is parallel to those impinging on R-Smad phosphorylation.
Insights
The deubiquitinase FAM (USP9x) is crucial for TGF-beta signaling by reversing Smad4 monoubiquitination, a key step in regulating cellular responses.
Area of Science:
- Cellular signaling pathways
- Molecular biology
- Ubiquitination and deubiquitination
Background:
- Smad complex assembly is vital for TGFbeta signaling.
- Mechanisms controlling nuclear Smad complex activity remain unclear.
Purpose of the Study:
- Identify novel regulators of Smad complex function.
- Elucidate the role of ubiquitination in TGFbeta signaling control.
Main Methods:
- siRNA screening to identify key proteins.
- In vivo ubiquitination analysis of Smad4.
- Investigating protein-protein interactions.
Main Results:
- FAM (USP9x) identified as a conserved deubiquitinase essential for TGFbeta and BMP signaling.
- Smad4 is monoubiquitinated at Lysine 519, inhibiting its function.
- FAM counteracts Smad4 monoubiquitination, restoring Smad4 activity.
- Ectodermin/Tif1gamma (Ecto) functions as a Smad4 monoubiquitin ligase.
Conclusions:
- Smad4 monoubiquitination/deubiquitination regulates TGFbeta responsiveness.
- FAM's deubiquitinase activity is critical for Smad4 function.
- This ubiquitination-based regulation is parallel to R-Smad phosphorylation.
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