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Updated: Jun 26, 2026

Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Aberrant BRAF splicing as an alternative mechanism for oncogenic B-Raf activation in thyroid carcinoma
Essa Y Baitei1, Minjing Zou, Futwan Al-Mohanna
1Department of Genetics, King Faisal Specialist Hospital and Research Centre, PO Box 3354, Riyadh 11211, Saudi Arabia.
Abstract:
Activating BRAF mutations have recently been reported in 28-83% of papillary thyroid carcinomas (PTCs). However, it is not known whether aberrant BRAF splicing occurs in thyroid carcinoma. To investigate aberrant BRAF splicing and its association with BRAF mutation in thyroid tumours, we studied aberrant BRAF splicing and BRAF mutation from 68 thyroid tumours. BRAF(V600E) mutation was detected in 20 of 43 PTCs and all three anaplastic thyroid carcinomas (ATCs). There is a higher frequency of BRAF mutation in PTC patients with stage III and IV tumours compared with stage I and II. Novel BRAF splicing variants were detected in 12 PTCs, three follicular variants of PTC (FVPTCs), and one ATC, as well as in two thyroid carcinoma cell lines, ARO and NPA. These variants did not have the N-terminal auto-inhibitory domain of wild-type B-Raf, resulting in an in-frame truncated protein that contained only the C-terminal kinase domain and caused constitutive activation of B-Raf. These variants were significantly associated with advanced disease stage and BRAF(V600E) mutation (p < 0.001, Fisher exact test). Furthermore, expression of these variants in NIH3T3 and CHO cells could activate the MAP kinase signalling pathway, transform them in vitro, and induce tumours in nude mice. These data suggest that BRAF splicing variants may function as an alternative mechanism for oncogenic B-Raf activation. Combination of the BRAF(V600E) mutation and its splicing variants may contribute towards disease progression to poorly differentiated thyroid carcinoma.
Insights
Activating BRAF mutations and novel BRAF splicing variants were found in thyroid cancers. These variants, lacking an inhibitory domain, promote tumor growth and are linked to advanced disease stages.
Area of Science:
- Oncogenic signaling pathways
- Molecular oncology
- Cancer genetics
Background:
- Activating BRAF mutations are common in papillary thyroid carcinomas (PTCs).
- The role of aberrant BRAF splicing in thyroid cancer remains unclear.
Purpose of the Study:
- To investigate aberrant BRAF splicing in thyroid tumors.
- To determine the association between BRAF splicing variants and BRAF mutations.
Main Methods:
- Analysis of BRAF splicing and mutations in 68 thyroid tumors.
- Detection of BRAF(V600E) mutation and novel BRAF splicing variants.
- Functional studies in cell lines and animal models.
Main Results:
- BRAF(V600E) mutation found in 20/43 PTCs and 3/3 anaplastic thyroid carcinomas (ATCs).
- Novel BRAF splicing variants identified in PTCs, FVPTCs, ATCs, and cell lines.
- Variants associated with advanced disease stage and BRAF(V600E) mutation (p < 0.001).
- Variants activated MAP kinase pathway, induced cell transformation, and tumor formation in vivo.
Conclusions:
- Aberrant BRAF splicing variants represent an alternative oncogenic activation mechanism.
- These variants contribute to thyroid cancer progression, particularly in advanced stages.
- Combined BRAF(V600E) mutation and splicing variants may drive progression to poorly differentiated thyroid carcinoma.
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