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Updated: Jun 26, 2026

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR (RS-PCR)
Published on: November 4, 2016
[Molecular subtyping of Staphylococcus aureus isolated from a severe food-poisoning]
Ying Zhang1, Zi-Yao Mo, Xing-Lin Pang
1Guangzhou Center for Disease Control and Prevention, Guangzhou 510080, China.
Objective:
To study the molecular types of Staphylococcus aureus isolated from a severe food-poisoning and to trace the possible strains.
Methods:
Real-time PCR was applied to detect nuc gene as a specific marker for S. aureus, mecA gene encoding methicillin resistance and 5 other genes encoding staphylococcal enterotoxins (sea, seb, see, sed, see). Isolates were also performed with 16S rRNA oligonucleotide sequence analyzing by DNAStar MegAlign 5.0 software and pulse-field gel electrophoresis (PFGE) by BioNumerics Version 4.0 software.
Results:
The nuc gene was detected from the 10 isolated strains, sea and seb genes were detected from 7 strains. There were 4 16 S rRNA types and 5 PFGE types found from all the strains.
Conclusions:
Three relative S. aureus strains were involved in the severe food-poisoning at least. Molecular subtyping might give a molecular epidemiological evidence and support the source tracing of an outbreak.
Insights
Molecular subtyping revealed at least three Staphylococcus aureus strains caused a severe food poisoning outbreak. This analysis provides crucial molecular epidemiological evidence for tracing the source of foodborne illnesses.
Area of Science:
- Microbiology
- Molecular Biology
- Food Safety
Context:
- Foodborne illnesses pose significant public health risks.
- Staphylococcus aureus is a common cause of bacterial food poisoning.
- Identifying the specific strains involved in outbreaks is crucial for control.
Purpose:
- To investigate the molecular characteristics of Staphylococcus aureus strains implicated in a severe food poisoning incident.
- To differentiate and trace the origins of the causative bacterial strains using molecular techniques.
Summary:
- Real-time PCR identified the nuc gene in all 10 S. aureus isolates and detected staphylococcal enterotoxin genes (sea, seb) in 7 strains.
- 16S rRNA gene sequencing revealed 4 distinct rRNA types.
- Pulse-field gel electrophoresis (PFGE) distinguished 5 different PFGE types among the isolates.
- The findings suggest at least three distinct S. aureus strains contributed to the food poisoning outbreak.
Impact:
- Molecular subtyping provides robust epidemiological data for outbreak investigations.
- This study demonstrates the utility of combining PCR, 16S rRNA sequencing, and PFGE for effective source tracing of foodborne pathogens.
- Understanding strain diversity aids in implementing targeted public health interventions to prevent future outbreaks.
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