Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Anatomical Terminology01:20

Anatomical Terminology

Knowledge of anatomy is essential to understand human biology and medicine. Anatomists and health care professionals use standard terminology to describe the human body with more precision and no ambiguity. Anatomical terms have mostly Greek and Latin-derived roots. Because these languages are rarely used in conversation, the meaning of words remains the same. Each term is made up of a root in between the prefixes and suffixes. The root of a term often refers to an organ, tissue, or condition,...
Regional Terms01:12

Regional Terms

Regional terms describe anatomy by dividing the body parts into different regions that contain structures involved in contributing similar functions. Using these terms helps increase the accurate description and identification of the particular region of interest or region affected by the disease.
Primarily, the human body has two major regions, the axial and appendicular regions. The axial region comprises regions from the head to the abdomen and makes up the central body axis. In contrast,...
Gross Anatomy of Bone01:17

Gross Anatomy of Bone

The two main features of a long bone are the diaphysis and the epiphysis.
The diaphysis is the tubular shaft that runs between the proximal and distal ends of the bone. The walls of the diaphysis are composed of dense and hard compact bone made of numerous osteons — the functional unit of the compact bone. The hollow region in the diaphysis is called the medullary cavity, which harbors the bone marrow. In infants and children, this marrow cavity is filled with red marrow, whereas in adults, it...
Bone Structure01:55

Bone Structure

Within the skeletal system, the structure of a bone, or osseous tissue, can be exemplified in a long bone, like the femur, where there are two types of osseous tissue: cortical and cancellous.
External Anatomy of the Kidney01:21

External Anatomy of the Kidney

The kidneys are a pair of bean-shaped organs in the human body that play a critical role in maintaining overall health. They filter out waste products from the blood, regulate blood pressure, maintain electrolyte balance, and stimulate the production of red blood cells.
The kidneys are located in the retroperitoneal space on either side of the vertebral column, protected posteriorly by the 11th and 12th ribs. The right kidney sits slightly lower than the left owing to the presence of the liver...
Cerebrum: Anatomical Overview I01:26

Cerebrum: Anatomical Overview I

The main and largest component of the human brain is the cerebrum. The cerebrum consists of two main parts: the cerebral cortex, an outer layer with wrinkles or folds known as gyri and shallow grooves called sulci, and a deeper region beneath it. The cerebrum divides into two distinct hemispheres and contains five different lobes: the frontal, parietal, temporal, occipital, and insula. The central sulcus separates the frontal and parietal lobes and two functionally important gyri — the...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Three-dimensional cellular dynamics and mandibular morphogenesis.

Frontiers in cell and developmental biology·2026
Same author

Using end-to-end attribution to link greenhouse gas emitters to child health outcomes.

Archives of disease in childhood·2026
Same author

Abnormal Lipid Signaling Characterizes Diastolic Dysfunction in Pediatric Cardiomyopathy.

JACC. Basic to translational science·2026
Same author

Primary infliximab failure in pediatric colonic inflammatory bowel disease: Development of a proteomics predictive model using a prospective Canadian cohort.

Inflammatory bowel diseases·2026
Same author

COMPREHENSIVE GENETIC INVESTIGATION REVEALS HETEROGENEOUS PATHWAYS TO OBSTRUCTIVE SLEEP APNEA.

medRxiv : the preprint server for health sciences·2026
Same author

The role of sagittal maxillary-mandibular relationships on perceptions of facial shape esthetics: A three-dimensional morphometric analysis.

American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics·2026
Same journal

IFAA Recommendations for good practice for the donation and anatomical study of human remains (revised 2026).

Anatomical sciences education·2026
Same journal

From classroom to clinic: Evaluating the educational utility of two Thiel embalming methods.

Anatomical sciences education·2026
Same journal

Turning AI hallucinations into scaffolds for morphologic reasoning: A pilot randomized trial of prompt-guided virtual microscopy learning during a focused histology module.

Anatomical sciences education·2026
Same journal

Effectiveness of three-dimensional printed cardiac models in teaching congenital heart anatomy: A systematic review and meta-analysis of randomized controlled trials.

Anatomical sciences education·2026
Same journal

Comparative evaluation of radiological anatomy knowledge and accuracy of ChatGPT-5, Gemini 2.5, and Grok 4 across normal and thinking modes.

Anatomical sciences education·2026
Same journal

The importance of mentorship for early career neuroanatomists: A historical analysis from the University of Michigan.

Anatomical sciences education·2026
See all related articles

Related Experiment Video

Updated: Jun 26, 2026

Dissection, MicroCT Scanning and Morphometric Analyses of the Baculum
04:32

Dissection, MicroCT Scanning and Morphometric Analyses of the Baculum

Published on: March 19, 2017

CAVEman: Standardized anatomical context for biomedical data mapping.

Andrei L Turinsky1, Elena Fanea, Quang Trinh

  • 1Sun Center of Excellence for Visual Genomics, University of Calgary, Calgary, Alberta, Canada.

Anatomical Sciences Education
|January 30, 2009
PubMed
Summary
This summary is machine-generated.

CAVEMAN is a new software system that integrates and explores anatomical and biomedical data using a 3D digital human anatomy atlas. This system aids in visualizing genetic processes and biomedical data for research and education.

More Related Videos

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains
06:18

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains

Published on: November 30, 2021

Pioneering Patient-Specific Approaches for Precision Surgery Using Imaging and Virtual Reality
06:18

Pioneering Patient-Specific Approaches for Precision Surgery Using Imaging and Virtual Reality

Published on: April 5, 2024

Related Experiment Videos

Last Updated: Jun 26, 2026

Dissection, MicroCT Scanning and Morphometric Analyses of the Baculum
04:32

Dissection, MicroCT Scanning and Morphometric Analyses of the Baculum

Published on: March 19, 2017

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains
06:18

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains

Published on: November 30, 2021

Pioneering Patient-Specific Approaches for Precision Surgery Using Imaging and Virtual Reality
06:18

Pioneering Patient-Specific Approaches for Precision Surgery Using Imaging and Virtual Reality

Published on: April 5, 2024

Area of Science:

  • Anatomy
  • Biomedical Informatics
  • Medical Education

Background:

  • Heterogeneous anatomical and biomedical data integration presents challenges in research and education.
  • Existing systems may lack comprehensive visualization capabilities for complex biological processes.
  • The increasing affordability of virtual reality (VR) technology opens new avenues for immersive biomedical learning.

Purpose of the Study:

  • To develop and present the CAVEman software system for visual integration and exploration of anatomical and biomedical data.
  • To create a portable, Java-based system leveraging a 3D digital atlas of human anatomy.
  • To facilitate the visualization of genetic processes and other biomedical data within an anatomical context.

Main Methods:

  • Development of the CAVEman software system.
  • Creation of a 3D digital atlas of adult male human anatomy based on Terminologia Anatomica.
  • Implementation of a data-indexing mechanism using standard ontologies to map diverse biomedical data types.
  • Integration of existing Java tools for biomedical data analysis.
  • Ensuring system portability across various computing environments via Java software.

Main Results:

  • The CAVEman system enables the visual integration and exploration of heterogeneous anatomical and biomedical data.
  • The system utilizes a 3D digital atlas of human anatomy, indexed by ontologies, to contextualize data.
  • CAVEMAN is currently used for visualizing genetic processes and facilitating data exploration.
  • The Java-based platform ensures broad accessibility on personal computers and workstations.
  • The system is adaptable for educational scenarios, including modeling gene expression and drug effects.

Conclusions:

  • CAVEMAN provides a powerful platform for visualizing and exploring complex biomedical data within a human anatomical framework.
  • The system's portability and integration capabilities enhance its utility for both research and educational purposes.
  • Future applications may include advanced simulations of physiological processes and patient-specific interventions, leveraging VR technology.